BAC Information

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BAC

Clone NameMSMg01-324B15
Chromosome13 (Build37)
Map Location 13,445,263 - 13,445,805
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108
Downstream geneGpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324B15.T7 (MSMg01no324_b15.b1)MSMg01-324B15.TJ (MSMg01no324_b15.g1)
ACCAG442342AG442343
length762777
length of high quality
(start - end)
572 (71 - 642)540 (64 - 603)
definitionCHROMAT_FILE: MSMg01no324_b15.b1 PHD_FILE: MSMg01no324_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:19 2005CHROMAT_FILE: MSMg01no324_b15.g1 PHD_FILE: MSMg01no324_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATAAXXXXXXXXXXXXXXXXXXXXXXXXXGTGCANGATAAGCGGAATT
CAAATTCTTTCCGAGAACCTGAAAATTTGGAGGCCCTGCTGTTGCTGCCT
CAAAAGATATCTATGCTGGTTCTGTTTGTGAGGTAATAAGGAATTCAACA
CAAAAGAAAATAAAAGGATCAGGTTCTAACAAAGCATGCAAATACCTTAA
TACTTGTTCCACTTCTTTCATAGAGCAAGCAAATTTGGGTGCAGCAAGGG
AGATAGGAGACACTTTCTTTCATACCTCTTCTTAATAAAATAAAGTAGTT
AGTATTCCTTATCAACGTGTATTAATACAAAATGGGACCAGTCTTCCTAG
TCTTGCCACAGAAATTGGCAGCACATTACCCAGTGCACTGAATGTTCAGG
CATGAAATTTACAGGACATATTAAACTTGCCTCAAAGTTGAGAATGAGCA
ATGTATTGCAGAGTCAGAATCTCTGAAAGGAGACTTTCAAAGACAAAGTG
TGAACTTGTAGAGGTAAAGCCAAAATGGCAATGCCTCTGCTAGTTGGTGG
GAAATACTCTATTTTGAGGGGAAATTTTTCTAGAGTTCTCTTTTTTTATT
GTATCCTGGTCTATTTTTATTATCAGAGTAATATCAATTCAGATAAATTA
GTCTGTTAGTATTCCCTTTCTAGAAAATTTTAAATATTTAAATTAAATGT
TGAGGGAATCAAAAAATTTGTAATTTTTAATTACCTAGGAATAAAAACTT
ACAATGCCTAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCGAATTCCAAATAATTTGCTGTTGTAACCACTG
GAGTCTGAACCATGAATTAAAATACATGTTTCTGCAATTTTTTGTTTCTT
TGTTTTTCCCCCTCCTCATCAAGTGCTTCTTATGAGACTGTGATTATAAT
TTATGGATTGGGGGAAAATAGACTTCTGCATAGTCTGAAGTATAGTATGA
TTCTCCTTGCAATCATAATGGCAGCCGTTGGCTGTGTGTGCTGAGGACTT
CGCATGGAGCGGCACACGAGGTGTCTTTTACAGGTGTTTCCTAAAGCATG
AAAACAAATGGGGTCTGAGACTCAGCCAGAGCTTGCTATTCTATTCTAAG
CTCAAGGCGTGTAGAGCCTGAGCGGACCACCAGAGCCTGTACTGATAATG
TGGACTTAATACCATTCAATCAAAAGGTAGGAACAGTATTCTATGATTTG
TATTGAGTCATAGGCTTAAAAAAATGCTTGTTTTATTTAACTTTCCAAAT
AGGTGGTACAAATGGTTAAAAAACACAATATACACTAATACCACAATGTC
TTCCCAGTTTCCCATAGTGCACACACATGCCCTCTGTCCCTGGCTTTTTG
TATTTCCATCCACACTCTCCTTTTTTAAAAAAATGCCCACATATTTACTT
ATAAAGCCCTTATTTCTCTAATTGCTCCTATTTTACTTGGAGGAATACCA
CGGAACCCCCTTCTGGTTTTTATACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_b15.g1 MSMg01no324_b15.g1 CHROMAT_FILE:
MSMg01no324_b15.g1 PHD_FILE: MSMg01no324_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:19 2005
         (540 letters)



>mm_chr13_13445058_13446005
          Length = 948

 Score =  903 bits (467), Expect = 0.0
 Identities = 522/547 (95%), Gaps = 16/547 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccaaataatttgctgttgtaaccactggagtctgaaccatgaattaaaatacatg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaaataatttgctgttgtaaccactggagtctgaaccatgaattaaaatacatg 265

                                                                       
Query: 66  tttctgcaattttttgtttctttgttttt-ccccctcctc---atcaagtgcttcttatg 121
           |||||||||| |||||||||||||||||| ||||||||||   ||| || ||||||||||
Sbjct: 266 tttctgcaatcttttgtttctttgtttttcccccctcctccttatcgagggcttcttatg 325

                                                                       
Query: 122 agactgtgattataatttatggattgggggaaaatagacttctgcatagtctgaagtata 181
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aggctgtgattataatttatggattgggggaaaatagacttctgcatagtctgaagtata 385

                                                                       
Query: 182 gtatgattctccttgcaatcataatggcagccgttggctgtgtgtgctgaggacttcgca 241
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 386 gtatgattctccttgcaatcatgatggcagccgttggctgtgtgtgctgaggactttgca 445

                                                                       
Query: 242 tggagcggcacacgaggtgtctttt----acaggtgtttcctaaagcatgaaaacaaatg 297
           |||||||||||||||||||     |    |||||| ||||||||||||||||||||||||
Sbjct: 446 tggagcggcacacgaggtg----gtaaggacaggtatttcctaaagcatgaaaacaaatg 501

                                                                       
Query: 298 gggtctgagactcagccagagcttgctattctattctaagctcaaggcgtgtagagcctg 357
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtgtctgagactcagccagagcttgctattctattctaagctcaaggcgtgtagagcctg 561

                                                                       
Query: 358 agcggaccaccagagcctgtactgataatgtggacttaataccattcaatcaaaaggtag 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agcggaccaccagagcctgtactgataatgtggacttaataccattcaatcaaaaggtag 621

                                                                       
Query: 418 gaacagtattctatgatttgtattgagtcataggcttaaaaaaatgcttgttttatttaa 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaacagtattctatgatttgtattgagtcataggcttaaaaaaatgcttgttttatttaa 681

                                                                       
Query: 478 ctttccaaataggtggtaca---a-atggttaaaaaacacaatatacactaataccacaa 533
           ||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||
Sbjct: 682 ctttccaaataggtggtacattcacatggttaaaaaacacaatatacactaataccacaa 741

                  
Query: 534 tgtcttc 540
           |||||||
Sbjct: 742 tgtcttc 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 948
Length adjustment: 10
Effective length of query: 530
Effective length of database: 938
Effective search space:   497140
Effective search space used:   497140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)