BAC Information

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BAC

Clone NameMSMg01-324I15
Chromosome13 (Build37)
Map Location 30,434,683 - 30,435,007
singlet/doubletsinglet
Overlap geneAgtr1a
Upstream geneCdkal1, E2f3, Mboat1
Downstream geneUqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257, LOC100041266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324I15.T7 (MSMg01no324_i15.b1)MSMg01-324I15.TJ (MSMg01no324_i15.g1)
ACCAG442662AG442663
length719719
length of high quality
(start - end)
326 (325 - 650)601 (77 - 677)
definitionCHROMAT_FILE: MSMg01no324_i15.b1 PHD_FILE: MSMg01no324_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:53 2005CHROMAT_FILE: MSMg01no324_i15.g1 PHD_FILE: MSMg01no324_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGTACGCGAGCGCGGA
ATTCAGGAATTACAAAAGACACAGTACCCTTCTTCGTTGCGCTAACAGTC
TCGGGCTAAGGAGAGAAAGCCAGAGTGAACTATGAGGTCATTGGCTGACA
GTCCATAGCAAACCCAAGGTGGGAACCGAGAGTCAGTAAAGAAAACTGGG
AGTGCATACACAGACTCTTGAATGAGTTCAGGCTATCCAGCCTGAAGCCT
TTTAGGCCCGTTGCACTTTCTTTCTTCAGCTTTTTGTTGTTGCTGTTACT
CTTCTGCTTTACAAATTTTCAGTGTTCAGTAAAAACAAAAGAAATTATTT
CCCTTACAAGTCAGTGATAACAAAACTAAATTCCTTTCTTTGGAATAGCA
AGAACCTAGGTCTGACTTTAACAGTATTTTGACAAGAATTGTGGATTCTA
CAAAGCCGGTGTAGACAGAGTGGTACTTGTGATTGCACTTGTCATTAAAT
GTTACTAAAAATATAAGACACATATACTACGACTTTATACTTCTTTATCA
TGTTGCTTAAAATTGTGGCCGCTTGGTCCTGTTAGCGAACCTCCTCTCGC
AGCAGGTCAAGTGTCAGAAAGTATTTAAGAAGCCAATGTGTGGGAAAGCC
TGTTCATCTCCTGCCATTGCAGAGAAAGAGGCAGCATCGAGCTGTGCGCC
GTGAATGGCTGGGACTCAT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTAGATCTGTGTCTCCTGTTCCT
TCAGTTTAGGATTTAAGAAGAAGAAACCAGAGGCTGTGGAGATGGCTCAG
GCTATAAAGTGCTAGCTGTTCAAGTTGAAGACCTGGGTTGACATCCTGCC
TTAGGGTTTCTAGTGCTGTGAAGAGACACCATGGCAACTCTTGAAAAGGA
AAATGTTCAATTGAGCTGGCTTACAGTTTCAGAAGATCAGTCCATTATCA
TCATGGCGGGAAACGTAGTATGCAGGCAGACATGGTGCTGGAGAAGGAGC
TGAGAGTTCTTCATCTGCAGGCAGCAGCAGAAGACTGAGTGCCACACTGG
CCATAGCTTGAGCATAAACACACCTCAAAACATGCTCCATAGTGACACAC
TTCCTCTAACAAGGTCACATCTACCCCAACAAAGCGATACCTCCTAATAG
TGCCAATGTCTGTGGGCCAAGCATTTAAACACTTGAGCAGGGCAGAGACA
GGCTGATCCCCGGAGTTTGCTGGCCCCCCACCCTAACTGAGTTGATGAAC
CCCAGGTTCAGTGAGAGTATTTCTAGTCAATGGCATGTCTACTTTAACTA
TATGTCTCATTAAAGTCAGTTTGGGTTACATCCAACCTCTGTCTGGTTAG
TTCATTTTCTTTTGTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_i15.b1 MSMg01no324_i15.b1 CHROMAT_FILE:
MSMg01no324_i15.b1 PHD_FILE: MSMg01no324_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:53 2005
         (326 letters)



>mm_chr13_30434482_30435207
          Length = 726

 Score =  598 bits (309), Expect = e-175
 Identities = 321/325 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   tcagtaaaaacaaaagaaattatttcccttacaagtcagtgataacaaaactaaattcct 61
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 526 tcagtaaaaacaaaagaaattatttcccttacaagtcagtgataacaatactaaattcct 467

                                                                       
Query: 62  ttctttggaatagcaagaacctaggtctgactttaacagtattttgacaagaattgtgga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttctttggaatagcaagaacctaggtctgactttaacagtattttgacaagaattgtgga 407

                                                                       
Query: 122 ttctacaaagccggtgtagacagagtggtacttgtgattgcacttgtcattaaatgttac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttctacaaagccggtgtagacagagtggtacttgtgattgcacttgtcattaaatgttac 347

                                                                       
Query: 182 taaaaatataagacacatatactacgactttatacttctttatcatgttgcttaaaattg 241
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 346 taaaaatataagacacatatactatgactttatacttctttatcatgttgcttaaaattg 287

                                                                       
Query: 242 tggccgcttggtcctgttagcgaacctcctctcgcagcaggtcaagtgtcagaaagtatt 301
           ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tggccacttggtcctggtagcgaacctcctctcgcagcaggtcaagtgtcagaaagtatt 227

                                    
Query: 302 taagaagccaatgtgtgggaaagcc 326
           |||||||||||||||||||||||||
Sbjct: 226 taagaagccaatgtgtgggaaagcc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)