Query= MSMg01no325_j19.b1 MSMg01no325_j19.b1 CHROMAT_FILE:
MSMg01no325_j19.b1 PHD_FILE: MSMg01no325_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:09 2005
(630 letters)
>mm_chr13_7971225_7972254
Length = 1030
Score = 1162 bits (601), Expect = 0.0
Identities = 627/643 (97%), Gaps = 13/643 (2%)
Strand = Plus / Plus
Query: 1 ttcattctgagaattaattaattttttcatttttatccttattgaacctcagcagttcaa 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcattctaagaattaattaattttttcatttttatccttattgaacctcagcagttcaa 247
Query: 61 tattgtaactatttttgtggggctatactctgaagaaatagacttgaatatgtctccttc 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 248 tattgtaactatttttgtggggctatactctgaagagatagacttgaatatgtctccttc 307
Query: 121 atcacgtgattgaaacaggatgtctttttcttatttcctgtagtcagaacggtatctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atcacgtgattgaaacaggatgtctttttcttatttcctgtagtcagaacggtatctaag 367
Query: 181 tctcagagagatgaagtcataatgaagggaattaggagcagacaataaatgtcttaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tctcagagagatgaagtcataatgaagggaattaggagcagacaataaatgtcttaagtt 427
Query: 241 cctgacatagaaggaatataaagaataaactcatagaagatacatatttagtctgataag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cctgacatagaaggaatataaagaataaactcatagaagatacatatttagtctgataag 487
Query: 301 gtacacacattttttttaatgtctaaaggctattttagttaaagttacctctaaagtgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtacacacattttttttaatgtctaaaggctattttagttaaagttacctctaaagtgaa 547
Query: 361 tgttctgctaacaaatttcgttggtttg------gtttttttttttttt-------ggca 407
|||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 548 tgttctgctaacaaatttcgttggtttgttttttgtttttttttttttttttttttggca 607
Query: 408 tgtaattcaaggacacaatcatatacagttggaaaagtgacaagagctagaggtggatgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgtaattcaaggacacaatcatatacagttggaaaagtgacaagagctagaggtggatgc 667
Query: 468 tgttgagggcataactctacaatcatttttctatgtgagattctatgcaggatagagaac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgttgagggcataactctacaatcatttttctatgtgagattctatgcaggatagagaac 727
Query: 528 cacaaatgtcaggtttgatcactaaactcaaggttactgagttgagaatacttgagagat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cacaaatgtcaggtttgatcactaaactcaaggttactgagttgagaatacttgagagat 787
Query: 588 taaggtagcaataacccacctcctggaaactatttcccagtga 630
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 788 taaggtggcaataacccacctcctggaaactatttcccagtga 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_j19.g1 MSMg01no325_j19.g1 CHROMAT_FILE:
MSMg01no325_j19.g1 PHD_FILE: MSMg01no325_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:09 2005
(671 letters)
>mm_chr13_8132453_8133523
Length = 1071
Score = 940 bits (486), Expect = 0.0
Identities = 507/514 (98%)
Strand = Plus / Minus
Query: 158 gaagtttatcagggagacatagaagtgtctaacctatagcctgaaatccatatatgcccc 217
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 gaagtttatcagggagagatagaagtgtctaacctatagcctgaaatccatatatgcccc 1012
Query: 218 aggataactatgaatgtgatccaacacaaagtctttttcttaactaagcattatgagatc 277
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 1011 aggataactatgaatgtgatccaacacaaagtcctaaacttaactaagcattatgagatc 952
Query: 278 attgatatttgctaagaattgtacagctctggagcatgaaccttgtggttgatgaggtca 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 attgatatttgctaagaattgtacagctctggagcatgaaccttgtggttgatgaggtca 892
Query: 338 tattgcaatgcgagaagattaagcctgccagtgagtctatgagtaactgtgggacacagc 397
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tattgcaatgcaagaagattaagcctgccagtgagtctatgagtaactgtgggacacagc 832
Query: 398 ctagagggggaactgacttagttgcttcagctcccgtttcagtttaagagaataaaaaaa 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ctagagggggaactgacttagttgcttcagctcccgtttcagtttaagagaataaaaaaa 772
Query: 458 ccatgtctttcatgattattttgcagctaaaatgagggcttatatatttttccttctgag 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ccatgtctttcatgattattttgcagctaaaatgagggcttatatatttttccttctgag 712
Query: 518 ttatttggttatttgtgtcatttaattggtactgattatttctgttttatttaacttata 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ttatttggttatttgtgtcatttaattggtactgattatttctgttttatttaacttata 652
Query: 578 aacttactgttgagatatttatcatggtattccagatattagcacaaaacaaaacaatct 637
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aacttactgttgagagatttatcatggtattccagatattagcacaaaacaaaacaatct 592
Query: 638 gaaagcattatggtgactcttcaattcttttaag 671
||||||||||||||||||||||||||||||||||
Sbjct: 591 gaaagcattatggtgactcttcaattcttttaag 558
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
