BAC Information

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BAC

Clone NameMSMg01-325M04
Chromosome13 (Build37)
Map Location 101,890,990 - 102,045,182
singlet/doubletdoublet
Overlap genenone
Upstream geneSmn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325M04.T7 (MSMg01no325_m04.b1)MSMg01-325M04.TJ (MSMg01no325_m04.g1)
ACCAG443565AG443566
length731838
length of high quality
(start - end)		641 (46 - 686)194 (74 - 267)
definitionCHROMAT_FILE: MSMg01no325_m04.b1 PHD_FILE: MSMg01no325_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:19 2005CHROMAT_FILE: MSMg01no325_m04.g1 PHD_FILE: MSMg01no325_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,044,546 - 102,045,182)(101,890,990 - 101,891,183)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCCTTTCCCGTTAAAATGTGGAACAAGTTATTTAGACTCTTA
GATAACTTATCTACAAAATGGCATAAATATATTCATGTCAGCAGGTTGTA
AGAATTCACCTGAAGGTTTATGGAATATGTATAGGCCAAGTCTGCCCTGA
GATTTGCTATACCACTATAAGCAAGTGAAAATACCAGCAATTCAAGGGTG
GAAATCTTTGGCCTCCAAATGCACTCCGAGATAACTGTGGTATACATACT
GTTAACAAGCGTGGGAAATCATTCACATCTGAGATTTTTGCATTGCCCTT
TGGACAACTGACCAAACCCTGAACTATCAGCCCCAACGATACATACATAT
TACCTGTTTCTGGCAGCCTCCATGGCCAAGAGACCCTGGCTATCTCTGAG
ACACTTCTTCTTCCCACTAGGCAGAAGGCACCCACCCCATGTCCTTTGTC
TCACCTCCCATTCCCCCCTTACTCCCTCCCTTCTCCCCTACCAGCTGAGA
ACCTGCAAGAGCTTGCCTGGCCTGAACGCTGGGTTGTTCTTTTGCCTTTA
AAATGCCTGCCCAGATTAATCAGTAAACAGCAGCCGTTGGCTGCCACTGG
GTCTCTTGGCCTGACATGAGTCCCTTCTCCTGCCAACAAGAGATGTGACG
TTTTANGGAAGATTCAGTTCTTGGCCTTTGC

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAATTTCAATATAAATGTCTACTTT
GTTGTATAAAGTTGAATACATTTTTAAATCTATTGCTAGATAATTAAGAA
CATCTCTCTCTCTGATGCCACCTCTCTTTCTTGGTGTATGCACATGATTC
TTAAGATACACTCATGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTG
TGTGTGTGTGTGTGTGTCNGNNNNNNTTGTNNNNNNNNTTTTNNNNNNNN
NNNNNNNNTTTNNTTNTTTTTTTTTTTTTTTTTTTTTTCNNTTGTTGTTT
GTTTGTGGGGTTTTTTTTTTTTTTATTGCCCCCCCCCCCCCGTGTCGGGT
ATATTTCAGTTTTTGTTTTCCTTCCCCTCCCCCCCCCCCTTTTTTTATTC
CTTCATGATTATGTTATAATCTACTGTCTAGAACTTCACTCCTGTTCTCT
CTTGTACACATGTTCCCACCTACCTTACACTGCTGCCCTTTGAACCTGTT
TTTCTCACTTTTCCTTCTCTTTATCCCTTTTCCCGCCCCCTCTTTTTCCA
ACATTTTGAGATATACTTGTTATCTGGGATTTATTTTCTCTATTTCCCTT
TTTACATTTTTACCCACCACTTCGACGACCACACCTACTAATTCACACCC
CCCTATCGTAACTTTTGTCGTATCGTTTCTTCTCTATACAACACTGTCTA
TCGCGCTGTATAATTATCCGAACCTTTTATTACCAAGCTTTTTACTACTT
TTTTCAGACCTATACATCTAAAATCAAACAAACAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_m04.b1 MSMg01no325_m04.b1 CHROMAT_FILE:
MSMg01no325_m04.b1 PHD_FILE: MSMg01no325_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:19 2005
         (641 letters)



>mm_chr13_102044342_102045382
          Length = 1041

 Score = 1185 bits (613), Expect = 0.0
 Identities = 631/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttccctttcccgttaaaatgtggaacaagttatttagactcttagataactta 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaattctttccctttccagttaaaatgtggaacaagttatttagactcttagataactta 782

                                                                       
Query: 65  tctacaaaatggcataaatatattcatgtcagcaggttgtaagaattcacctgaaggttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tctacaaaatggcataaatatattcatgtcagcaggttgtaagaattcacctgaaggttt 722

                                                                       
Query: 125 atggaatatgtataggccaagtctgccctgagatttgctataccactataagcaagtgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atggaatatgtataggccaagtctgccctgagatttgctataccactataagcaagtgaa 662

                                                                       
Query: 185 aataccagcaattcaagggtggaaatctttggcctccaaatgcactccgagataactgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aataccagcaattcaagggtggaaatctttggcctccaaatgcactccgagataactgtg 602

                                                                       
Query: 245 gtatacatactgttaacaagcgtgggaaatcattcacatctgagatttttgcattgccct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtatacatactgttaacaagcgtgggaaatcattcacatctgagatttttgcattgccct 542

                                                                       
Query: 305 ttggacaactgaccaaaccctgaactatcagccccaacgatacatacatattacctgttt 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttggacagctgaccaaaccctgaactatcagccccaacgatacatacatattacctgttt 482

                                                                       
Query: 365 ctggcagcctccatggccaagagaccctggctatctctgagacacttcttcttcccacta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctggcagcctccatggccaagagaccctggctatctctgagacacttcttcttcccacta 422

                                                                       
Query: 425 ggcagaaggcacccaccccatgtcctttgtctcacctcccattccccccttactccctcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggcagaaggcacccaccccatgtcctttgtctcacctcccattccccccttactccctcc 362

                                                                       
Query: 485 cttctcccctaccagctgagaacctgcaagagcttgcctggcctgaacgctgggttgttc 544
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 361 cttctcccctaccagctgagaacctgcaagagcttgcctagcctgaacgctgggttgttc 302

                                                                       
Query: 545 ttttgcctttaaaatgcctgcccagattaatcagtaaacagcagccgttggctgccactg 604
           ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 301 ttttgcctttaaaatgcctgcccggattaatcagtaaacagcagcccttggctgccactg 242

                                                
Query: 605 ggtctcttggcctgacatgagtcccttctcctgccaa 641
           ||||||||| |||||||||||||||||||||||||||
Sbjct: 241 ggtctcttgccctgacatgagtcccttctcctgccaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_m04.g1 MSMg01no325_m04.g1 CHROMAT_FILE:
MSMg01no325_m04.g1 PHD_FILE: MSMg01no325_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:19 2005
         (194 letters)



>mm_chr13_101890790_101891383
          Length = 594

 Score =  337 bits (174), Expect = 4e-97
 Identities = 189/194 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataatttcaatataaatgtctactttgttgtataaagttgaatacatttttaaatctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataatttcaatataaatgtctactttgttgtataaagttgaatacatttttaaatctat 260

                                                                       
Query: 61  tgctagataattaagaacatctctctctctgatgccacctctctttcttggtgtatgcac 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctagataattaagaacatatctctctctgatgccacctctctttcttggtgtatgcac 320

                                                                       
Query: 121 atgattcttaagatacactcatgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgt 180
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 atgattcttaagatacactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 380

                         
Query: 181 gtgtgtgtgtgtgt 194
            ||||||| |||||
Sbjct: 381 ctgtgtgtctgtgt 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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