Query= MSMg01no325_m18.b1 MSMg01no325_m18.b1 CHROMAT_FILE:
MSMg01no325_m18.b1 PHD_FILE: MSMg01no325_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:22 2005
(684 letters)
>mm_chr13_117899643_117900726
Length = 1084
Score = 909 bits (470), Expect = 0.0
Identities = 515/530 (97%), Gaps = 2/530 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtgtggtttcctggtacaggattaacaacatgcgaagcagtgctgtgagcatg 64
||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 529 gaattcagtgtgggttcttggtacaggattaacaacatgtgaagcagtgctgtgagcatg 470
Query: 65 tttcatgctgaacttaatgtaaatacgccataccaaaacgatttaggatgcagattcata 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 469 tttcatgctgaacttaatgtaaatatgccataccaaaacgatttaggatgcagattcata 410
Query: 125 gatctgttaaatcacactggtcgtaagtcatcagtgctgttatctctaggaacctaaatc 184
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 409 gatctgttaaatcacactggtcgtaagtcaccagtgctgttatctataggaacctaaatc 350
Query: 185 cagttgacattcatttctaaattttcatttgaaatgtctttggcatctaaaaaatttctc 244
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 349 cagttgacattcatttctaaattttcatttgaaatgtcttcagcgtctaaaaaatttctc 290
Query: 245 cctagagccagtcaaaaatcaatatagaatcatatttcaagtcatgatgcttttctggcc 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 289 cctagagccagtcaaaaatcaatatagaatcgtatttcaagtcatgatgcttttctggcc 230
Query: 305 cactgaaactttattataatattagctatgctgaataatattaaaacaacccgaggcaag 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 229 cactgaaactttattataatattaggtatgctgaataatattaaaacaacccgaggcaag 170
Query: 365 ttaaagtcatttgacaaaagaggactccaattaagaaaaggcctttataagatccggcca 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ttaaagtcatttgagaaaagaggactccaattaagaaaaggcctttataagatccggcca 110
Query: 425 taggaaacatgttggccactagtagtttgcgg-ggtaggacccagcccattgtatgtagg 483
|||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct: 109 taggaaacatgttggccactagtagtttgcggagg-aggacccagcccattatatgtagg 51
Query: 484 gccagccctgggcaggaagtactaggttctatgagaaagcagactgagca 533
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 gccagccctgggcaggaagtactaggttctatgagaaagcagactgagca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_m18.g1 MSMg01no325_m18.g1 CHROMAT_FILE:
MSMg01no325_m18.g1 PHD_FILE: MSMg01no325_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:22 2005
(655 letters)
>mm_chr13_117732956_117734010
Length = 1055
Score = 1243 bits (643), Expect = 0.0
Identities = 652/655 (99%)
Strand = Plus / Plus
Query: 1 catactcacactgtggtacacatacttacatgtacactaatgatgcaattctaaagagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catactcacactgtggtacacatacttacatgtacactaatgatgcaattctaaagagcc 260
Query: 61 aactctcccaagtattgtattgtgcatgcatgattttgaccttaggccaacttaaaaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactctcccaagtattgtattgtgcatgcatgattttgaccttaggccaacttaaaaggc 320
Query: 121 agtaggatagaaggctttgttttcaaggcaaggtcttacatagcccaggccttgaactcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaggatagaaggctttgttttcaaggcaaggtcttacatagcccaggccttgaactcc 380
Query: 181 atgtatacctaaggatagccttgaacttgtgatcttacttccaactctgtgtgctgagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtatacctaaggatagccttgaacttgtgatcttacttccaactctgtgtgctgagat 440
Query: 241 ggcatacatgtgcccacattcagttttatgtggtgccaaagactggactcaggcttggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcatacatgtgcccacattcagttttatgtggtgccaaagactggactcaggcttggga 500
Query: 301 catgccatgccaggcaagcattctgccagctgaattacatccttaccctaagaatatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgccatgccaggcaagcattctgccagctgaattacatccttaccctaagaatatttt 560
Query: 361 caaatctggaatcccagtacgtgggaggtagaggcaagacctgtggttcaaagcatcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaatctggaatcccagtacgtgggaggtagaggcaagacctgtggttcaaagcatcctc 620
Query: 421 agcaagaggagaaagtagacgtttgtaaaacaagaaggtattttccgatgctgtaaaaga 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 agcaagaggagaaagtagacgtttgtaaaacaagaagttattttccgatgctgtaaaaga 680
Query: 481 aacacgtttggtaccatgaggcgtgtttccataataaatatatatgtactacagatatac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacacgtttggtaccatgaggcgtgtttccataataaatatatatgtactacagatatac 740
Query: 541 acctacagagatactgcttgagaagagcggctcccctcccttctctccgggggactctga 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 741 acctacagagatactgcttgagaagaacggctcccctcccttctctccgggggactctga 800
Query: 601 atgaaagagccttcccgcacatctgaattacttccgtcagtacaactgcagcatg 655
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 801 atgaaagagccttcccgcacatctgaattacttccgtcagtacaactacagcatg 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
