BAC Information

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BAC

Clone NameMSMg01-325P18
Chromosome13 (Build37)
Map Location 20,900,233 - 21,080,848
singlet/doubletdoublet
Overlap geneAoah
Upstream geneGpr141, LOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325P18.T7 (MSMg01no325_p18.b1)MSMg01-325P18.TJ (MSMg01no325_p18.g1)
ACCAG443727AG443728
length748736
length of high quality
(start - end)		702 (45 - 746)134 (373 - 506)
definitionCHROMAT_FILE: MSMg01no325_p18.b1 PHD_FILE: MSMg01no325_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:36 2005CHROMAT_FILE: MSMg01no325_p18.g1 PHD_FILE: MSMg01no325_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,900,233 - 20,900,930)(21,080,716 - 21,080,848)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCACAGTTGTGGAGGTTGAGGGTCTGAAGTAAACGGTTTGTCTC
CTGCCTTCTGGGGTTGCACGTCTTCTTGTTCTTAGTCTTATAGCTGCATA
ACCCCTGCATTCATAGTCATGTGACCTTTCTCCTTTGCATGTGTCATTGT
ATCTTCTTGTGAGAATACTTTATTGACTATGGGCCTGGTCTAGTCTTGCA
TAACCTTATCCTACTACTTGCACCAGTTCCAAATAAGGCATATGATCAAA
TTCCAAGAAAAACATGAATTTAAGGGACATCAGCCAAGTTCACGAGCTGT
TTTCACCTGTGAGTTCCATAAAATATTTGGAAGGAAATAATTTCAATGAA
ATGTAATTAATTCCTTTCATAAAATAAAAGAGAAGGAAATATATCCCAGT
TTGTGTTAGGTTTTGCTCTAGTGTTAAACCCAGACAGACACCACAAGAAA
GAGTTAACATTTCATATTGTTACACAACATTATTGTATGAACGTCGATTT
TTTTTTAAATCTCTTAAAACACAGAATAAATTCAGCATAGCATAAAATTA
AATGAATGCTAGGTACCCGATGACCAAATCTTTGCTAGAAATGCTCGGTT
GACTTATTATCTGAATGTTGATTAATAGAATGCACTACATTAGCAAAATA
AAGGGTATACATTACCAATCCAGCAGAAATGTGAATTATTTGACAAGA

GCAGTGGGAGGCCTGGCGGCCGCCGGGCTTTCCAACCCGANGAACNANAG
AAGGATTTCGGNCACCGAGACNCNNGCAAGAANAACACAAGGAAAAGCAA
NACANANGAAAGACCAANNNNCNNCNAGANGANANANGNGNCAAANNGAA
NNNNNNNCNCNNAAAAGNNCCAANNAAAAANAAANACGGNGNNNNCAAGA
AANANNGGAGNCNNACAAAAAAACAANNNNGAGCAGNNGNCATTTTTGCN
NNCANANCANNGNGNCNCCAGAGNGAGCAACNAAGACNNGGANACNAAAG
ACCNNCNCTAGTTTTTTTTTCACANNACNNCAGACNCCCCAAACAGAAAG
GCCCTATTTGTCCCCCCACAAATAACCTTTTCCATCTCCTTTCAAGGTTT
TGGGTTATGACCAAATATTCAATCCAATAGTGGTGCTCCCCACATGATTC
CTGGGGCCCTATTTCAGTGTGACACAGGTGACCTTAGAAATTCCCTCCAG
TGCTGCTGTAGCTTTCGAAAGCATTTTAAGTATTTTCATTTTGAAATGAT
TGCTAAAGTTCTAAAAAATAGAACAAAGATATATACACCTCCTTTACCTA
GATTCCTCTAACTATATACATCTGCAACAATTACCATGAGCAAAACTATT
TTTTTTACATGTGACCAGTACTGTCTGCCTAATCTGCATACCTAAGCCAA
ATTGCCCTTGATGACCACTTTCTTGCCTAGGTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_p18.b1 MSMg01no325_p18.b1 CHROMAT_FILE:
MSMg01no325_p18.b1 PHD_FILE: MSMg01no325_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:36 2005
         (702 letters)



>mm_chr13_20900029_20901130
          Length = 1102

 Score = 1342 bits (694), Expect = 0.0
 Identities = 697/698 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcacagttgtggaggttgagggtctgaagtaaacggtttgtctcctgccttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcacagttgtggaggttgagggtctgaagtaaacggtttgtctcctgccttc 264

                                                                       
Query: 65  tggggttgcacgtcttcttgttcttagtcttatagctgcataacccctgcattcatagtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggggttgcacgtcttcttgttcttagtcttatagctgcataacccctgcattcatagtc 324

                                                                       
Query: 125 atgtgacctttctcctttgcatgtgtcattgtatcttcttgtgagaatactttattgact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtgacctttctcctttgcatgtgtcattgtatcttcttgtgagaatactttattgact 384

                                                                       
Query: 185 atgggcctggtctagtcttgcataaccttatcctactacttgcaccagttccaaataagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgggcctggtctagtcttgcataaccttatcctactacttgcaccagttccaaataagg 444

                                                                       
Query: 245 catatgatcaaattccaagaaaaacatgaatttaagggacatcagccaagttcacgagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catatgatcaaattccaagaaaaacatgaatttaagggacatcagccaagttcacgagct 504

                                                                       
Query: 305 gttttcacctgtgagttccataaaatatttggaaggaaataatttcaatgaaatgtaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttttcacctgtgagttccataaaatatttggaaggaaataatttcaatgaaatgtaatt 564

                                                                       
Query: 365 aattcctttcataaaataaaagagaaggaaatatatcccagtttgtgttaggttttgctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aattcctttcataaaataaaagagaaggaaatatatcccagtttgtgttaggttttgctc 624

                                                                       
Query: 425 tagtgttaaacccagacagacaccacaagaaagagttaacatttcatattgttacacaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagtgttaaacccagacagacaccacaagaaagagttaacatttcatattgttacacaac 684

                                                                       
Query: 485 attattgtatgaacgtcgatttttttttaaatctcttaaaacacagaataaattcagcat 544
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attattgtatgaacgtagatttttttttaaatctcttaaaacacagaataaattcagcat 744

                                                                       
Query: 545 agcataaaattaaatgaatgctaggtacccgatgaccaaatctttgctagaaatgctcgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agcataaaattaaatgaatgctaggtacccgatgaccaaatctttgctagaaatgctcgg 804

                                                                       
Query: 605 ttgacttattatctgaatgttgattaatagaatgcactacattagcaaaataaagggtat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttgacttattatctgaatgttgattaatagaatgcactacattagcaaaataaagggtat 864

                                                 
Query: 665 acattaccaatccagcagaaatgtgaattatttgacaa 702
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 865 acattaccaatccagcagaaatgtgaattatttgacaa 902


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no325_p18.g1 MSMg01no325_p18.g1 CHROMAT_FILE:
MSMg01no325_p18.g1 PHD_FILE: MSMg01no325_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:36 2005
         (134 letters)



>mm_chr13_21080516_21081049
          Length = 534

 Score =  242 bits (125), Expect = 7e-69
 Identities = 131/133 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaccttttccatctcctttcaaggttttgggttatgaccaaatattcaatccaatagtg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 333 taaccttttccatctcctttcaaggttttgggttatgatcaaatattcaatccaatagtg 274

                                                                       
Query: 61  gtgctccccacatgattcctggggccctatttcagtgtgacacaggtgaccttagaaatt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtactccccacatgattcctggggccctatttcagtgtgacacaggtgaccttagaaatt 214

                        
Query: 121 ccctccagtgctg 133
           |||||||||||||
Sbjct: 213 ccctccagtgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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