BAC Information

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BAC

Clone NameMSMg01-326P01
Chromosome13 (Build37)
Map Location 69,014,048 - 69,014,549
singlet/doubletsinglet
Overlap geneAdcy2
Upstream geneLOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, LOC666205
Downstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326P01.T7 (MSMg01no326_p01.b1)MSMg01-326P01.TJ (MSMg01no326_p01.g1)
ACCAG444429AG444430
length789704
length of high quality
(start - end)
285 (51 - 335)502 (72 - 573)
definitionCHROMAT_FILE: MSMg01no326_p01.b1 PHD_FILE: MSMg01no326_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:44 2005CHROMAT_FILE: MSMg01no326_p01.g1 PHD_FILE: MSMg01no326_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCGTTATCAAATATTAAGTGGTCAGCCCTAAAAAGTATA
TACACATAAGGAATATATTGACCAAGCAGGTTGTATTTATATTTTTTGTA
ATCTATACATGTCTGTATATGCACAAATACACATATGCAGCAATAATTGT
TGTAAAAAGAGACCATAAATTTCTTTTTTTCTTTTTTTTCTTTTTTTTAA
ATTTATTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCCA
AAAGTCCCCCATACCNCTCCCCCCCCCCACTTCTTCTACCCCACCTCATT
TCCCATTTTTTTTTTTTTTTTTTTTCCCTCNTTCTTCCCCCCCCTCCTTC
CTCCTCCCCTCCCCCTCTTTTTTTTCTTTTTCCACCCTCCTTTCNTCTAA
AATACTCCTTCAATCCCCCATTTTATTTTTATTACTCCCTTACAACTTCC
TCTTTACCCCTATACCACAACACTTCTAATTTCTTTCCAACTCTCCTTCT
CATATCCACCTTCTCCCTTCTTTTCAATTCTTTCTCCCTATATTCCATTA
CCTACTTACTTCTACCCACCCCTTTTACACATCTTTCGTTTTTCTATCTC
TCATTTTTTCCCTTTCTTCCCTCCCACACCCCCTCACCATCCTTTTCTAT
TCACTATACCTTTCCTCCCCCCAACCTCCATCAACTTCATTTTCATCACT
ATACCTTTCCTTCTTTTTTCCCCCCTGCTTCCACACCTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGACACAAAAAATTCTTCCCAAGGTCCACAGAATATGTGG
CAGAAGCAAGCAAGGAAGACACAATGACACATACACATGCTGACCTCTGA
TGTGCTATGTTCCATGAAAGATGAGAATCAAAATGGATAACAGGTTTTAT
GGAAGAGTGGAGTATGGACACCTCATTCCTTCCTCTTCCATCACTACATC
TATATCCACCAATGGCTACTTAGGGCAGGGTACTGATTCTGTCCCCACCT
TAACTCTACTTCTTTTCTATTTATAAGCAGGCTTGTCTTCTGGGAATGGT
GCTAAAAGGAGAGATGTAAAAAAAGAATGTTCAAAGATTAGAGTGGAAGA
GTTCTCTCCATGGTGACTTAAATGATAGAATTAAAGTACTCGGGGAAATC
ACCCTGGGGCTGGGATCTAAGATAGTGTACACTGTAAACAACTCCCTCAC
TCTGTTAGCATCTGCAGCTTCTATCTCATCTCAGGTCCCTGTCTTGGGCT
CTAGCTTGAGGGTCAGACATAAAACACAAGGCAGATTTTTAAGAAGTTTC
TAAGACATAGATATTTGCATTTTACCACGTGTAGGATACATTCCATCTTC
TCAGCCTGGGAATTACCTGGAACACATATAACCCAGAAGAAACAGAAACA
CTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_p01.g1 MSMg01no326_p01.g1 CHROMAT_FILE:
MSMg01no326_p01.g1 PHD_FILE: MSMg01no326_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:44 2005
         (502 letters)



>mm_chr13_69013848_69014749
          Length = 902

 Score =  955 bits (494), Expect = 0.0
 Identities = 500/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttcccaaggtccacagaatatgtggcagaagcaagcaaggaagacacaatgacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttcccaaggtccacagaatatgtggcagaagcaagcaaggaagacacaatgacaca 260

                                                                       
Query: 61  tacacatgctgacctctgatgtgctatgttccatgaaagatgagaatcaaaatggataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacatgctgacctctgatgtgctatgttccatgaaagatgagaatcaaaatggataac 320

                                                                       
Query: 121 aggttttatggaagagtggagtatggacacctcattccttcctcttccatcactacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggttttatggaagagtggagtatggacacctcattccttcctcttccatcactacatct 380

                                                                       
Query: 181 atatccaccaatggctacttagggcagggtactgattctgtccccaccttaactctactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatccaccaatggctacttagggcagggtactgattctgtccccaccttaactctactt 440

                                                                       
Query: 241 cttttctatttataagcaggcttgtcttctgggaatggtgctaaaaggagagatgtaaaa 300
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttttctatatagaagcaggcttgtcttctgggaatggtgctaaaaggagagatgtaaaa 500

                                                                       
Query: 301 aaagaatgttcaaagattagagtggaagagttctctccatggtgacttaaatgatagaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagaatgttcaaagattagagtggaagagttctctccatggtgacttaaatgatagaat 560

                                                                       
Query: 361 taaagtactcggggaaatcaccctggggctgggatctaagatagtgtacactgtaaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagtactcggggaaatcaccctggggctgggatctaagatagtgtacactgtaaacaa 620

                                                                       
Query: 421 ctccctcactctgttagcatctgcagcttctatctcatctcaggtccctgtcttgggctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctccctcactctgttagcatctgcagcttctatctcatctcaggtccctgtcttgggctc 680

                                 
Query: 481 tagcttgagggtcagacataaa 502
           ||||||||||||||||||||||
Sbjct: 681 tagcttgagggtcagacataaa 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)