BAC Information

Click to search

BAC

Clone NameMSMg01-327A21
Chromosome13 (Build37)
Map Location 51,952,603 - 51,953,127
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
Downstream geneLOC100040321, Diras2, LOC100040572, Syk, Auh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327A21.T7 (MSMg01no327_a21.b1)MSMg01-327A21.TJ (MSMg01no327_a21.g1)
ACCAG444513AG444514
length742739
length of high quality
(start - end)
491 (45 - 535)525 (76 - 600)
definitionCHROMAT_FILE: MSMg01no327_a21.b1 PHD_FILE: MSMg01no327_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:52 2005CHROMAT_FILE: MSMg01no327_a21.g1 PHD_FILE: MSMg01no327_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAACCGCGGA
ATTCCTGCTTTGGCCTCCCTGAATGATGGACTGCGCTCTGTAAATCAGAT
TAAAAACCCCATCCTCCACCAACCAGCTTTTAGTCATTGTGTTATCACAG
CAGCAGAAACTGAATGCGAATAGTCTCTCAGTGACCTCCACTCAATGAGT
AGGCTGTACTGGTGGACCAGCAAGCTTCGGGGATCTTTCTGTCTCTCCCT
TCCCAGTAGTGGGACACAGCAGGTCCTGACACAGCTTGGCTTTCTTAACA
TGCATTGTAGGGGTTGAATTCTTGCCCTCTGTCTTGCAAGGGAGGTAATG
GCTGTATCTCTTGAAGCCCCGTGCTGTTTTTTTTTTTTTTTTTTTTCCTG
GTTTGGTGGATACCACCCCCCCTATGACCTAGGCTGCCCTTAAGCTTGAT
AAGTAAGCAAGGATGGCCTTGAACTCCTGATCCTGCCGCCTCTGCCTCCC
ATTGGTAGCCACACTGTCGGTTCTCATTCCCTTGGTAAACTCATCCAGTT
GAGTGGTCACCTTAAACCACATGGAGTGCCATGCTCTTCTTTTTCATCAA
AGATGATTGGCCTACGCTTATACCACGCACAGTGTTAGGTCCTATATAAT
TGTGTGTCCCTAACGTATATTGTTCCCCACCATTCGCCTTGCTCAATTAT
TTTACAACCGTTTCCTTTTTTTTCTTATCTCGCGCAAATGGC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXGTTCCCAAAAATTCTCCTGAGAAAGAAAGGGGCTAGGA
AGGAGGGACTGAACACAGCCGGTCTCTTTCCTAGGATGTGTGCAGCTTGG
CCTAATTTTCTTGTAATATAATCAGGTTAAAGTCCAGCTCTGAGCGCCGG
TGTTGTTCATGGCTTCCTGTGACGAGGCACAGACGCACTTGCCTGGCTCT
CCAGCCCCTGGATGTGGGGAAAAATAGATCAATGAGCTCCTGGAAGAACC
CAGGCCTCACTGTCTGGAAGTCTTTTCAGCAGAACCCAGACAGTTATGGG
AACATTCACAGGATGGTAATGCTTGCTTTCTCCTTCAGTGGCTCTCTGAC
CCTGTGGCCATTGACTGACCCGCCGGTCACGTACCGAGTGACTGATGTGG
CTTTACTTTGTCATGGTGAAGGGACGTGGGACGCACTACCTGTTTTCAGA
CTTCAGAGCTGGTTGTGGGTTGAGGTTTATGAGCCTGTTGTGTGGTAGTT
TGAATTGATCTCACTTTAATAAATTTTATTATTATTATTGTTATTATTAG
TGGTAGTGGTGGTGGAGGTTTGAGTCTTATCCTATTTTTTACTTTCTTTC
CTTTTTTTTTCTTTTTCCCCCCTTTTTTTTTTTCGCCCCTCCCCCTTTTA
TATTTATTTCCTTTTCTTTCTTTTTTCCCTCCTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_a21.g1 MSMg01no327_a21.g1 CHROMAT_FILE:
MSMg01no327_a21.g1 PHD_FILE: MSMg01no327_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:52 2005
         (525 letters)



>mm_chr13_51952403_51953327
          Length = 925

 Score =  938 bits (485), Expect = 0.0
 Identities = 515/529 (97%), Gaps = 8/529 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctgagaaagaaaggggctaggaaggagggactgaacacagccggtctctttcctagg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 201 ctcctgagaaagaaaggggctaggaaggagggactgaacacagctggtctctttcctggg 260

                                                                       
Query: 61  atgtgtgcagcttggcctaattttcttgtaatataatcaggttaaagtccagctctgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtgtgcagcttggcctaattttcttgtaatataatcaggttaaagtccagctctgagc 320

                                                                       
Query: 121 gccggtgttgttcatggcttcctgtgacgaggcacagacgcacttgcctggctctccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccggtgttgttcatggcttcctgtgacgaggcacagacgcacttgcctggctctccagc 380

                                                                       
Query: 181 ccctggatgtggggaaaaatagatcaatgagctcctggaagaacccaggcctcactgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctggatgtggggaaaaatagatcaatgagctcctggaagaacccaggcctcactgtct 440

                                                                       
Query: 241 ggaagtcttttcag----cagaacccagacagttatgggaacattcacaggatggtaatg 296
           |||||||    |||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagtc----caggcggcagaacccagacagttatgggaacattcacaggatggtaatg 496

                                                                       
Query: 297 cttgctttctccttcagtggctctctgaccctgtggccattgactgacccgccggtcacg 356
           ||||||||||||||||||||||||||||||||||||||||||||||| | |  |||||||
Sbjct: 497 cttgctttctccttcagtggctctctgaccctgtggccattgactgagctggtggtcacg 556

                                                                       
Query: 357 taccgagtgactgatgtggctttactttgtcatggtgaagggacgtgggacgcactacct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taccgagtgactgatgtggctttactttgtcatggtgaagggacgtgggacgcactacct 616

                                                                       
Query: 417 gttttcagacttcagagctggttgtgggttgaggtttatgagcctgttgtgtggtagttt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gttttcagacttcagagctggttgtgggttgaggtttatgagcctgttgtgtggtagttt 676

                                                            
Query: 477 gaattgatctcactttaataaattttattattattattgttattattag 525
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaattgatctcactttaataaattttattattattattgttattattag 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)