Query= MSMg01no328_n17.b1 MSMg01no328_n17.b1 CHROMAT_FILE:
MSMg01no328_n17.b1 PHD_FILE: MSMg01no328_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:07 2005
(367 letters)
>mm_chr13_22369526_22370292
Length = 767
Score = 690 bits (357), Expect = 0.0
Identities = 360/361 (99%)
Strand = Plus / Minus
Query: 7 gaattctttgctttgcttctatttcattttgttattctcactgatatgggtgatgatagt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaattctttgctttgcttctatttcattttgttattctcactgatatgggtgatgatagt 508
Query: 67 gatattgtagacataaatcccatgttaatgcatgtacttacctttccaagcaaacacttc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gatattgtagacataaatcccatgttaatgcatgtacttacctttccaagcaaacacttc 448
Query: 127 cttatgtctctcagctctaaagtttatattccaatggtgcactttttttttagaatgtaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttatgtctctcagctctaaagtttatattccaatggtgcactttttttttagaatgtaa 388
Query: 187 ttctctgtcccgcaaaagctagtaaaatcagacttgtttttaactcctctctgtaatgta 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttctctgtcccgcaaaagctagtaaaatcagacttgtttttaactcctctctgtaatgta 328
Query: 247 ccctgtcagctagcccaagatgaacaagttcccattgcattggagttattcttaaaatca 306
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 327 ccctgtcagctagcccaagatgaacaagttcccagtgcattggagttattcttaaaatca 268
Query: 307 ctaattgatgtaaaatattttaccacttcactattcttacaaggtaaaacaagattaaca 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctaattgatgtaaaatattttaccacttcactattcttacaaggtaaaacaagattaaca 208
Query: 367 a 367
|
Sbjct: 207 a 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_n17.g1 MSMg01no328_n17.g1 CHROMAT_FILE:
MSMg01no328_n17.g1 PHD_FILE: MSMg01no328_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:07 2005
(535 letters)
>mm_chr13_22188524_22189458
Length = 935
Score = 808 bits (418), Expect = 0.0
Identities = 516/572 (90%), Gaps = 38/572 (6%)
Strand = Plus / Plus
Query: 1 aaatagagcaggaacctggagccagaactgatattgaggctatggagggatgccttaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 aaatagagcaggaacctggagccagaactgatattgaggctatggagggatgccttaatt 224
Query: 61 ggcttgctcatcatagctgttcagcctgttttgtatagaacccaggtccatctccccagg 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 225 ggcttgctcatcatagctgttcagcctgttttgtatagaacccaggaccatctccctagg 284
Query: 121 gatagca-cacttcacaatgggctgagtcctcccccatcaatcagtatttaagaaaatgc 179
||| ||| ||| | ||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct: 285 gatggcaccacct-acaatgggctgggccctcccccatcaatcagtatttgagaaaatgc 343
Query: 180 cttacagttgaactacatggaggtattttctcaattcaggtccccttctttcagataagt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 344 cttacagttgaactacatggaggtattttctcaattcaggtccccttctttcagatcact 403
Query: 240 ctatctcatgtcaagttgaactagcctgcacatggtcattggctaccataaagcagtgac 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 404 ctatctcatgtcaagttgaactagcctgcacatggccattggctaccataaagcagtgac 463
Query: 300 tatatgccccttctacctgtgggtgattggctactagtccttaacgacaaaggaaccaga 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 464 tatatgccccttctacctgtgggtgattggctactagtccttaaggacaaaggaaccaga 523
Query: 360 ggtctttatgctgggtgtgggtgtggg--------------------------------- 386
|||||| ||||||||||||||||||||
Sbjct: 524 ggtcttcatgctgggtgtgggtgtgggtgtgggtgtgggtgtgggtgtgggtgcgcgtgt 583
Query: 387 ---acaatgttcagacatgaagaactttcatagactactgcagtgagacaaatctacttc 443
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gggacagtattcagacatgaagaactttcatagactactgcagtgagacaaatctacttc 643
Query: 444 actgctccaggaatagagtatattagagcttttttatggttacaggtgaaaatggctaat 503
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 644 actgctccaggaatagagtatattagggattttttatggttacaggtgaaaatggctaat 703
Query: 504 tggtcacaacatctgtttaccatgcaggtgag 535
|||||||||||||| ||||||| |||||||||
Sbjct: 704 tggtcacaacatctttttaccacgcaggtgag 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
