Query= MSMg01no329_d18.b1 MSMg01no329_d18.b1 CHROMAT_FILE:
MSMg01no329_d18.b1 PHD_FILE: MSMg01no329_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:37 2005
(615 letters)
>mm_chr13_57243936_57244951
Length = 1016
Score = 1108 bits (573), Expect = 0.0
Identities = 606/617 (98%), Gaps = 3/617 (0%)
Strand = Plus / Plus
Query: 1 acacactctgctttggtcctttgtcctctttgcctattcagcctgaaggcccccgtgatg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 acacactctgctttggtcctttgtcctctttgcctgttcagcctgaaggcccccgtgatg 260
Query: 61 ccaagtcccccctactcaggctaaattctcttccttgaagatgaagctctcccccacctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagtcccccctactcaggctaaattctcttccttgaagatgaagctctcccccacctc 320
Query: 121 ctgttttctcacaaagcaggagttgattttcaccattagcacatgtccttagcacatctt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 321 ctgttttctcacaaagcaggagttgattttcaccattagcacatgcccttagcacctctt 380
Query: 181 tatgcttggtaagctgcctgtgtccctcactaagctggggaatcctcaaaagcagtgcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgcttggtaagctgcctgtgtccctcactaagctggggaatcctcaaaagcagtgcca 440
Query: 241 tgtcctgatttgtcccatgctgagcctcctgggatgcctgccaagtagatggacttacgg 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tgtcctgatttgtcccatgctgagcctcctgggacgcctgccaagtagatggacttacgg 500
Query: 301 gtgcttcctcgtcttgagctcagactggagtctgcatctcccaagcccgctgggcttata 360
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 501 gtgcttcctcgtcttgagctcagactggagtctgcatctcccaaggtcactgggcttata 560
Query: 361 gaggcatttgaaaagcacccgtgcctttaacttgcaact-tgttcagctgtataatggga 419
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 561 gaggcatttgaaaagcacccgtgcctttaacttgcaa-tgtgttcagctgtataatggga 619
Query: 420 gtaatgattgctaactcaaa-gggtttctgtacattaagttcatatggccagcgtgcttg 478
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 620 gtaatgattgctaactcaaaagggtttctgtacattaagttcatatggtcagcgtgcttg 679
Query: 479 aagtccactaaaggatgggcacaaaataagatatttctgttgccttcgaaccctctctcc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagtccactaaaggatgggcacaaaataagatatttctgttgccttcgaaccctctctcc 739
Query: 539 atccctttgttcacagatacttaactttatacaaaatgtttcccaaactgattttgattt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atccctttgttcacagatacttaactttatacaaaatgtttcccaaactgattttgattt 799
Query: 599 atactccctatgcaggg 615
|||||||||||||||||
Sbjct: 800 atactccctatgcaggg 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_d18.g1 MSMg01no329_d18.g1 CHROMAT_FILE:
MSMg01no329_d18.g1 PHD_FILE: MSMg01no329_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:37 2005
(559 letters)
>mm_chr13_57424576_57425532
Length = 957
Score = 806 bits (417), Expect = 0.0
Identities = 460/475 (96%), Gaps = 6/475 (1%)
Strand = Plus / Minus
Query: 84 catcaataaaggaaggggaggaaatccagactggaggcgactttgccaagccagtgtctg 143
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 957 catcaataaaggaaggggaggaaattcagactggaggcgactttgccaagccagtgtctg 898
Query: 144 ataaagaagttgtatccaaaccgccaacacccttgagatgtaacaatagaaaaaaa-cac 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 897 ataaagaagttgtatccaaaccgccaacacccttgagatgtaacaatagaaaaaaaccac 838
Query: 203 aatgtaactttagagactccgcaaaggtctgcacagg-ccggtcatcaaagaagctaagc 261
||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 837 aatgtaactttagagactctgcaaaggtctgcacaggtcc-atcatcaaagaagctaagc 779
Query: 262 agagagaaaagaaccacaagagagaacacggcttgtcggaggatacggaagttaatccaa 321
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 778 agagagaaaagaaccacaagagaaaacacggcttgtcggaggatacggaagttaatccaa 719
Query: 322 actgagacaccttacacatggaccaaggcggctaaaatatccatcccccttaagtgataa 381
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 718 actgagacaccttacacatggatcaaggcggctaaaatatccatcccccttaagtgataa 659
Query: 382 taagaacattgtagaagcaaggagatctcactggttggtgccagagtcgaggacactatg 441
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 658 taagaacattgtagaagcaaggagatctcattggttggtgccagagtcgagaacactatg 599
Query: 442 ctgcggggcagttcacccacttctttgggttaagctacacagtgtcaggtcagcaatcac 501
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 598 ctgcggggcagttcacccacttctttgggttaagctacagagt--caggtcagcaatcac 541
Query: 502 acctttatacacttgccaaagttatttgaataaaattcctttcagaacaaaaaaa 556
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 540 acctttatacacttgccaaagttatttgaaaaaaattcctttcagaa-aaaaaaa 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 957
Length adjustment: 10
Effective length of query: 549
Effective length of database: 947
Effective search space: 519903
Effective search space used: 519903
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
