BAC Information

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BAC

Clone NameMSMg01-329E11
Chromosome13 (Build37)
Map Location 13,731,355 - 13,731,598
singlet/doubletsinglet
Overlap geneLyst
Upstream geneLOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1
Downstream geneLOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1, Mrpl32, Psma2, AW209491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329E11.T7 (MSMg01no329_e11.b1)MSMg01-329E11.TJ (MSMg01no329_e11.g1)
ACCAG446154AG446155
length716743
length of high quality
(start - end)
245 (76 - 320)244 (82 - 325)
definitionCHROMAT_FILE: MSMg01no329_e11.b1 PHD_FILE: MSMg01no329_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:40 2005CHROMAT_FILE: MSMg01no329_e11.g1 PHD_FILE: MSMg01no329_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGC
GGAATTCCACAGGATAACATAAGAACCCCAGCTGTTCTTCATAGAGCAAC
AAGGCTTCAGTCAAGTTGACACAATCCCCCTGTGTGAAGTGTTTTCCATC
CTGTTTCAGAACCTTCATTGACAGGTCGAGAATCAGTCTGAGGAGCTCTC
ATATGCAATCTTCTTCTGGAGATGTAGAGACAGGGACAGCTGTTAAATCA
CTAATCACATAGTCAAACTCTCTCCCTTCTTTAGCGTACCTCTTCAGTAC
TAGGATACAGTCTTCTATAATATTTTTTTAGCAGTCTCCTTTGAGATTGT
CTAAGACATCTCCACTTGTTCTCTTCATGTATTTCTTGATTCATCAATTA
CCATTGGGTTAATCTCTACCCCACCGACCATCTTTGGTTTCAGTTTGACG
ATTTCACTTAATATGCCTCCATGGCCACCTACCAGAATCAGTACATCTTT
GCCAGTGTAGACTTCTTTACCATTGCCCCATGTTGTGCTAGTCATTCTCT
GCCAAATTAACATCCCCACTGATCATGTGCCTCGTCATGTCCTCAGTTTG
GCCCCCCATTCTCGGGGAGACTCGTGTTCTGGTACAGTTGTCCCTGTAGT
CCACCCAATATTTGTTTATCTACTTTTAATCCTTTTTAATTTTTGACTTT
TTTGGAATCGTCCCTG
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTCAAATGAGTAGTTG
AGGTCATTTTGTTTTAGAGTTTAGAAGTTCATAATCTTGGTGTTACTGTT
GGGAACTCTGCCCATATTTTCTGACCTTTGTTTATGGTTTTGTTGTGGTT
ATCATCTGGTCTGTACCTATTTGTTTTACTTTTTAGACTTGGCATTCCTT
CAAAGAAAGATAAGGTTTTTTGTTTTTTAATCTACTGTTATAGAGAGCTA
GGCAAGCGTAATAGCTTCATTCAAAGGTTTTTTCTGAAGGCAAAAGAAAA
AATAATTAGAACTGCTTCTTAGAATCTTATCGAACCTTTATCAATAAGGA
ACTTGTATACTCTAGAGATTTTTACCCCCCCCGAAGTTTCGGAGATTTAC
TTGGTATAAATTTACTACTTATTTATTTTTATATGTATGCTATTTTTCGT
GATACTATGTCTGTTCATTATGTGCGTATAGTTTCTGTTCATCCTTTTTC
AGAGGTGTCCTGGTGGTGTTTGGCACTGTAGGTTTATTCCTCCTTTTTCC
TTCTTTTCTTCTTTTTATATCCGCTCTTTTGCCTCCCATTACTTCTTTTC
GTTTCTTTGACTCTTTTACTTTCTCCCCTGTTTTTTTCAACCCGCTTCTT
TCATTCTCCTTCTTCTTCTTTTGTGTTCCCTACACTATTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_e11.g1 MSMg01no329_e11.g1 CHROMAT_FILE:
MSMg01no329_e11.g1 PHD_FILE: MSMg01no329_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:40 2005
         (244 letters)



>mm_chr13_13731155_13731798
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtcaaatgagtagttgaggtcattttgttttagagtttagaagttcataatcttggt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgttaaatgagtagttgaggtcattttgttttagagtttagaagttcataatcttggt 260

                                                                       
Query: 61  gttactgttgggaactctgcccatattttctgacctttgtttatggttttgttgtggtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttactgttgggaactctgcccatattttctgacctttgtttatggttttgttgtggtta 320

                                                                       
Query: 121 tcatctggtctgtacctatttgttttactttttagacttggcattccttcaaagaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatctggtctgtacctatttgttttactttttagacttggcattccttcaaagaaagat 380

                                                                       
Query: 181 aaggttttttgttttttaatctactgttatagagagctaggcaagcgtaatagcttcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggttttttgttttttaatctactgttatagagagctaggcaagcgtaatagcttcatt 440

               
Query: 241 caaa 244
           ||||
Sbjct: 441 caaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)