Query= MSMg01no329_g20.b1 MSMg01no329_g20.b1 CHROMAT_FILE:
MSMg01no329_g20.b1 PHD_FILE: MSMg01no329_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:52 2005
(659 letters)
>mm_chr13_87995412_87996469
Length = 1058
Score = 1006 bits (520), Expect = 0.0
Identities = 625/668 (93%), Gaps = 14/668 (2%)
Strand = Plus / Plus
Query: 5 gaattcatattttatctacataatattacatgtagtacatatgtacatatatatgtcgtt 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 205 gaattcatattttatctacataatattacatgtaatacatatgtacatatatatgtcttt 264
Query: 65 aatgaaattattatacttgggcttacaatgctcttacaagaaaaatgtatatcaccaagt 124
|||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 aatgaaattattgtagttgggcttacaatgctctcacaagaaaaatgtatatcaccaagt 324
Query: 125 gtaaaagacttccttttgagttgttctttgtttgggagagttcaatagacttccaagaca 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 gtaaaagacttccttttgagttgttctttggttgggagagttcaatagacttccaagaca 384
Query: 185 tctactgtggtcatttttgacttttagatgttcaagctaattctctattctatggtgcca 244
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct: 385 tctactgtggtcatttttgactttcagatgttcgagctaattctctattctatggtgtca 444
Query: 245 aatattttatacaaatgagagacaaaaaataaaaaaacaaaactaaacattgaatttaaa 304
|||||||| | |||| ||||||||||||||||||| |||||||||||| ||||| || ||
Sbjct: 445 aatattttgtgcaaaggagagacaaaaaataaaaagacaaaactaaactttgaa-ttcaa 503
Query: 305 aacaaccagccagcaaaacattttt-------------agggttgcaatagcaccattca 351
||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 504 aacaaccagccaggaaaacatttttttcttggggggggggggttggaatagcaccattca 563
Query: 352 cttagtcaataacccaggacttgcaaggtcatggatttagagaataacctactaccataa 411
|||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||||||
Sbjct: 564 cttagtcaataacccaggacttgcgagatcatggatttagaaaataacctaataccataa 623
Query: 412 ccttgctggaccagtataatttataactttattttaaatactgtttcttttacccagaga 471
||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 624 ccttgatggaccagtataatttataactttattttaaatactgtttattttacctagaga 683
Query: 472 taaatatagctctcacccttcatcaaagaaacatcccatttgccacaggcagaaatcctt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taaatatagctctcacccttcatcaaagaaacatcccatttgccacaggcagaaatcctt 743
Query: 532 tcagaaatcttcaattgctcaaaaataaaacaattgatctggtgttctcagcccagtgga 591
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 744 tcagaaatctgcaattgctcaaaaataaaacaattgatctggtgttcccagcccagtgga 803
Query: 592 taaacctacttgacaacacacctgaggctcatggaacattgaaatatagaggactgaatg 651
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tacacctacttcacaacacacctgaggctcatggaacattgaaatatagaggactgaatg 863
Query: 652 atttgaag 659
||||||||
Sbjct: 864 atttgaag 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space: 680152
Effective search space used: 680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_g20.g1 MSMg01no329_g20.g1 CHROMAT_FILE:
MSMg01no329_g20.g1 PHD_FILE: MSMg01no329_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:52 2005
(686 letters)
>mm_chr13_88056797_88057881
Length = 1085
Score = 1247 bits (645), Expect = 0.0
Identities = 675/685 (98%), Gaps = 1/685 (0%)
Strand = Plus / Minus
Query: 1 aataacgtatgttcccttgttgtttgttcataagcaccccagtttatttagctttattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 aataacgtatgttcccttgttgtttgttcataagcaccccagtttatttagctttattct 825
Query: 61 atctccttatttcttcattctcacaactccttgacctgcttaaacaactttttacatact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 atctccttatttcttcattctcacaactccttgacctgcttaaacaactttttacatact 765
Query: 121 ttttccattctttattttcatttcactaaccttctgccatcttccctccttaaatacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ttttccattctttattttcatttcactaaccttctgccatcttccctccttaaatacata 705
Query: 181 ttccccatgacgactttctcttgtttcctagtttccaaaaaaaactcttttataaacatg 240
||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 704 ttccccatgacgactttgtcttgtttcctagtttcc-aaaaaacctcttttataaacatg 646
Query: 241 caaaagatgtgaaaaatgtcatatatatccatgtattgtttaaaatattgaaatacagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 caaaagatgtgaaaaatgtcatatatatccatgtattgtttaaaatattgaaatacagta 586
Query: 301 aattttgtctgtgtcacttttggtgatatttactttttacattaccattgattgggcgta 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 585 aattttgtctgtgtcacttttggtgatatttactttttacattaccattgattgggtgta 526
Query: 361 aatattgctttaacttcataaatataaacatacattttcctgttaatgtctgagctggag 420
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 525 aatattgttttaacttcataaatataaacatacatttacctgttaatgtctgagctggag 466
Query: 421 ttctgattcttttctgtgaacatagaagggacagctaattagtatgtagcatttatggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttctgattcttttctgtgaacatagaagggacagctaattagtatgtagcatttatggaa 406
Query: 481 ttatataattacacagttgttaagaaatctcttcaggtctgtgtttcatattctagggaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttatataattacacagttgttaagaaatctcttcaggtctgtgtttcatattctagggaa 346
Query: 541 tttacagaagtatgcttattaaaattgatggtttaagtatgtgcaagaaatccgtcattt 600
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttacagaagtatgtttattaaaattgatggtttaagtatgtgcaagaaatccgtcattc 286
Query: 601 attaatttagaaatcatggttctgtaatgaaatttaagattcctcattataattgaaaac 660
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 285 attaatttagaaatcatggttccataatgaaatttaagattcctcattataattgaaaac 226
Query: 661 attttttgcagtattttgccttcta 685
|||||||||||||||||||||||||
Sbjct: 225 attttttgcagtattttgccttcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1085
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1075
Effective search space: 726700
Effective search space used: 726700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
