Query= MSMg01no329_k02.b1 MSMg01no329_k02.b1 CHROMAT_FILE:
MSMg01no329_k02.b1 PHD_FILE: MSMg01no329_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:09 2005
(684 letters)
>mm_chr13_64877994_64879077
Length = 1084
Score = 1307 bits (676), Expect = 0.0
Identities = 679/680 (99%)
Strand = Plus / Minus
Query: 5 gaattccataaattacctaattaaactctagagaaattcaagaataaaagactattgttg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gaattccataaattaactaattaaactctagagaaattcaagaataaaagactattgttg 825
Query: 65 ctttcattgtaatgactaggagagaaagagattaactagttcagcatccagttatttggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ctttcattgtaatgactaggagagaaagagattaactagttcagcatccagttatttggt 765
Query: 125 gacatggtgatgatttgaactaaggaagctgtttacagaactttcactttaggtgaacgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gacatggtgatgatttgaactaaggaagctgtttacagaactttcactttaggtgaacgt 705
Query: 185 tcacttgaaaggtggtccctaagcagtagtaccagaaacaaccaggaacaacaaatataa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tcacttgaaaggtggtccctaagcagtagtaccagaaacaaccaggaacaacaaatataa 645
Query: 245 caaatatacaaatatacaaataacaaatatacactctcaggactcacccaaatctgctga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 caaatatacaaatatacaaataacaaatatacactctcaggactcacccaaatctgctga 585
Query: 305 accggactctcaggaaaggtatatgtggaaatgtgtgaggtaagaaacatagatggacat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 accggactctcaggaaaggtatatgtggaaatgtgtgaggtaagaaacatagatggacat 525
Query: 365 gtttgtgtctttctaccacattagaaattattgactaacagtaaactcacaagctacatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtttgtgtctttctaccacattagaaattattgactaacagtaaactcacaagctacatt 465
Query: 425 ggtttctttaactgcagtttaccaagaagtcctgattcttcttgatagctgcttgtaggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ggtttctttaactgcagtttaccaagaagtcctgattcttcttgatagctgcttgtaggc 405
Query: 485 aagaacaagttcttgaacttgttcttttctacaattcactagaacaagtttattccagcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aagaacaagttcttgaacttgttcttttctacaattcactagaacaagtttattccagcc 345
Query: 545 ttaatttacacatcaagcagtaaatatgtctacacatgtattataggtcacagaatgctt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttaatttacacatcaagcagtaaatatgtctacacatgtattataggtcacagaatgctt 285
Query: 605 acaaagaggttaaaaaaaagtcatagcaaaattcaataaattcaaagataccttcctaga 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 acaaagaggttaaaaaaaagtcatagcaaaattcaataaattcaaagataccttcctaga 225
Query: 665 ggcaggggcagagatcctgt 684
||||||||||||||||||||
Sbjct: 224 ggcaggggcagagatcctgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_k02.g1 MSMg01no329_k02.g1 CHROMAT_FILE:
MSMg01no329_k02.g1 PHD_FILE: MSMg01no329_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:09 2005
(535 letters)
>mm_chr13_64722858_64723792
Length = 935
Score = 988 bits (511), Expect = 0.0
Identities = 530/537 (98%), Gaps = 3/537 (0%)
Strand = Plus / Plus
Query: 1 caggccactgaaaggttatcttagaaggcatgtggatggttcttgaggtaacactcaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 caggccactgaaaggttatcttagaaggcatgtggatggttcttgaggtaacactcaggg 259
Query: 61 ttttcctctagcgcgcgcgcgcgcgcgcgcgcacacacacacacacacacacacacacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttttcctctagcgcgcgcgcgcgcgcgcgcgcacacacacacacacacacacacacacac 319
Query: 121 acacacacacacacacac--gngaaaaagtgcatgtcaggatctcaaggataaattttag 178
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acacacacacacacacacacg-gaaaaagtgcatgtcaggatctcaaggataaattttag 378
Query: 179 taattatttaaattgacagtatgatttgagattttttcaaaacaaaaacactagctggct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taattatttaaattgacagtatgatttgagattttttcaaaacaaaaacactagctggct 438
Query: 239 gactctatgtacattaaaggttgaaatcttataagtaatgccagattcatttgtcatcga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gactctatgtacattaaaggttgaaatcttataagtaatgccagattcatttgtcatcga 498
Query: 299 gacaggtcaatagccttgtggtactgactatggcttactatagtaaacctgattgtgata 358
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 499 gacaggtcaatagccttgtggtactgactatggcttactatagtaaatctgattgtgata 558
Query: 359 tcaagatgtcagattttttttcaccttgattgccacatatttaatacctctctggtctgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcaagatgtcagattttttttcaccttgattgccacatatttaatacctctctggtctgt 618
Query: 419 agctatcaccatctctccagcctttcagatatggccaagtcagttaaacaactgatatgt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 619 agctatcaccatctctccagcctttcagatatggccaagtcagttaaacaactgacatgt 678
Query: 479 ttttcacgcttcatatgttaaaataattttcttgattaacaaataaaaatataagac 535
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 679 ttttcaggcttcatatgttaaaataattttcttgattaaaaaataaaaatataagac 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
