Query= MSMg01no329_p18.b1 MSMg01no329_p18.b1 CHROMAT_FILE:
MSMg01no329_p18.b1 PHD_FILE: MSMg01no329_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:37 2005
(606 letters)
>mm_chr13_87466063_87467071
Length = 1009
Score = 1000 bits (517), Expect = 0.0
Identities = 569/587 (96%), Gaps = 3/587 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaattagtctccatacattaaaataaggtttgaacccttgagaataatgaaacc 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaattagtctacaaacattaaaataaggtttgaacccttgagaataatgaaacc 263
Query: 64 taacatcatttaatttaaatggataattaaaccttatagattaattaagaaaaaataatt 123
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 taacaccatttaatttaaatggataattaaaccttatagattaattaagaaaaaataaat 323
Query: 124 aatagtttactcaactaaagcactcctgtttacctaaaggattgcattctataacataga 183
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 324 aatagtttactcaactaaagcactcctgtttacctaaacgattacattctataacataga 383
Query: 184 tag--gaaaaaaaacctaattaattattgacttctattcaaataacatattttcaaaata 241
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagaaaaaaaaaaaactaattaattattgacttctattcaaataacatattttcaaaata 443
Query: 242 aataacacttggaa-ttttatgtttatgctaatttatattaattaaagtaaacttaatca 300
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 aataacacttggaatttttatgtttgtgctaatttatattaattaaagtaaacttaatca 503
Query: 301 aaacatttttgttcactcattaaaaataatacaagaaattattctatgaaaattatgcat 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 504 aaacatttttgttcactcattaaaaataatacaagaaattattctataaaaattatgcat 563
Query: 361 tcttttgataactatgagtacaatttacatattgataaagtataaataaaaaactctgtt 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcttttgataattatgagtacaatttacatattgataaagtataaataaaaaactctgtt 623
Query: 421 tactatgaaaaaggagaacagctaaaagttccaaaagaattttggaatataatatattta 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 tactatgaaaaaggagaacagctagaagttccaaaagaattttggaatataatatattta 683
Query: 481 catataatcctgatgtaattactaaagacatgctatttaatacatatcaatttggttttc 540
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catataatcctgatgcaattattaaagacatgctatttaatacatatcaatttggttttc 743
Query: 541 tataacatgtatgaatatatatgtgtatacacacacacacacacaca 587
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 744 tataacatgtatgaatatatatgtgtatatacacacacacacacaca 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1009
Length adjustment: 10
Effective length of query: 596
Effective length of database: 999
Effective search space: 595404
Effective search space used: 595404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_p18.g1 MSMg01no329_p18.g1 CHROMAT_FILE:
MSMg01no329_p18.g1 PHD_FILE: MSMg01no329_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:37 2005
(501 letters)
>mm_chr13_87628827_87629722
Length = 896
Score = 665 bits (344), Expect = 0.0
Identities = 401/440 (91%), Gaps = 35/440 (7%)
Strand = Plus / Minus
Query: 1 ctagtcactgggtcatactgacatcaataaattgagtttgaggaatttgtttacatcttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 524 ctagtcactgggtcatactgacatcaataaattgagtttgaggaatttgtttacatctct 465
Query: 61 accaattaacacttgaactgacatatatgtaccacatgttgtggtaaggtcccgctaata 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 464 accaattaacacttgaactgacatatatgtaccacatgttatggtaaggtcctgctaata 405
Query: 121 gggtacaagtgattctttacctctggttctgctaaaggttttattgttccttgcatggaa 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gggtacaagtgactctttacctctggttctgctaaaggttttattgttccttgcatggaa 345
Query: 181 acacaggagcagcttctggaaggacatgtgggtaagataaatttataaagatagggatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 acacaggagcagcttctggaaggacatgtgggtaagataaatttataaagatagggatgc 285
Query: 241 atcatgagcttagtaatattatcagaggattctccagagaacatgtcaccctctcctcca 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 284 atcatgagcttagtaatattatcagaggattctccagagaa-----caccctctcctcca 230
Query: 301 accccagttagaggggagcccactataagaaagtgtaaagcccccatcaaaggcagagca 360
|||||||||||||||||||||||||||| |||| ||
Sbjct: 229 accccagttagaggggagcccactataa------gtaa-------at------------- 196
Query: 361 aactgtttgcttaactgtgtactttactgtatacattgtacctaggggaaggagagtaat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ---tgtttgcttaactgtgtactttactgtatacattgtacctaggggaaggagagtaat 139
Query: 421 tacttatatatatatatata 440
||||| ||||||||||||||
Sbjct: 138 tactt-tatatatatatata 120
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 896
Length adjustment: 10
Effective length of query: 491
Effective length of database: 886
Effective search space: 435026
Effective search space used: 435026
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
