BAC Information

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BAC

Clone NameMSMg01-330I07
Chromosome13 (Build37)
Map Location 101,295,368 - 101,295,563
singlet/doubletsinglet
Overlap geneOcln
Upstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2
Downstream geneLOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330I07.T7 (MSMg01no330_i07.b1)MSMg01-330I07.TJ (MSMg01no330_i07.g1)
ACCAG447053AG447054
length809725
length of high quality
(start - end)
231 (82 - 312)294 (11 - 304)
definitionCHROMAT_FILE: MSMg01no330_i07.b1 PHD_FILE: MSMg01no330_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:14 2005CHROMAT_FILE: MSMg01no330_i07.g1 PHD_FILE: MSMg01no330_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAACTCGGCGGAATTCTTTG
NTCAGTTACGAACACGATTTTTAANGGGGNNATTTGATTTTCTGAAGTTC
ACCTTCTTGATTTCTTCAATATGTTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATT
GACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATT
TGTCAATTCTCGATCTTACAGCACAAGCCATTGCTATTCTGTTCAGGAAT
TTTTCCCCTGTGTTTTTTTTTTCTAGGCTTTTCCCCACTTTCTCCTCTAT
AAGTTTTTTTTTTTCTCCCCCCCCCCCCCGCTCCTTGATCCACTTAGATT
TGACCTTACCACTCGGAGATAAAATAAGAAAAAAATTTGCATTCTTCTAC
ACGATAACTACCATTTGTGTCAGCACAATTGTTGAACATGCTGTCTTTCT
TCCACTGGATGGATTTAGCTTCCCTAGTCAAAGAACATGTGGCCATCAGC
TGTGCGGATTTTTTTCTGTGATCTTCAATTCCAAATCCTTTGGTCTATCT
TGTATGGTCTTCCATACCCACTATCCTTGTCACTCTATTATCCATTATTT
GCTCCTTGTTTACAAATGACTTTCACTCTTATTTTTTGTAATGTATTATA
CCCCAAATTATATCTTTCCCTCCCTTGGCACCACATTTTATTTCGTTTTC
CTTTAATATTTTAACTAAGGATCTCTCCCAGTAATTATATTTTTGTCAAT
ATATTGTTN
ATTCCGCGGAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC
CGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACA
CCCGGCTTTCAGTGTTCTTTTAAAGCCATTCCATTGAAGTACGAGTGACA
GGGCTTTTCAGTTTTTACCTCTTAGATTCTCCTGTCCATTCCTTTGTGGT
TTCTGTTGCTTCTGGTCTAGACTGTCTTCTTGCTGTGCTCTGTGAGGTTG
GGACCCAGTACATACTATACAAGCACCGTACACCAAGCCATTCCCTAGTC
TCTGCTTTTCATTTTCTCCCCCGCACCCCCCAAGTCCTAACTTAACTTGC
CCCAACGTGACCTTGCACTGACTAGAAAAAAATCTCCTAAGAGCCGTCCC
CCACCCCTTTTTTTTTTTTTTTTGGTAAAGGTTGACTTCTTCTGTTCTTT
CCTTTTATCAACACCTTTGACCGGAGCAATTATGTATAAGGCCCATAAAC
CAATTTTTTTCATAGCGAGTTTACAAAGGCGTTAGAGAAATCCACAATAT
TGGCGATGAGCTTGAATTTTCTTCTGTAGAAAGCATTTTTCTTTCTTAAA
AATCGGTTCTCAAGAAATTTGTGGTCAAAGCTTGATTTGGATACTGAATT
ATTTCTAATTTCACTGTCTGGCCTTGTGTTTGTTTTGTTTTCTAACTGGG
TACTTATTGACTCGTCCTAATTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_i07.g1 MSMg01no330_i07.g1 CHROMAT_FILE:
MSMg01no330_i07.g1 PHD_FILE: MSMg01no330_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:14 2005
         (294 letters)



>mm_chr13_101295069_101295763
          Length = 695

 Score =  348 bits (180), Expect = e-100
 Identities = 192/196 (97%), Gaps = 1/196 (0%)
 Strand = Plus / Minus

                                                                       
Query: 100 cagtgttcttttaaagccattccattgaagtacgagtgacagggcttttcagtttttac- 158
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 495 cagtgttcttttaaagccattccattgaagtatgagtgacagggcttttcagtttttacg 436

                                                                       
Query: 159 ctcttagattctcctgtccattcctttgtggtttctgttgcttctggtctagactgtctt 218
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 435 ctcttagattctcctgtccattcctttgtggtttctgttgtttctggtctagactgtctt 376

                                                                       
Query: 219 cttgctgtgctctgtgaggttgggacccagtacatactatacaagcaccgtacaccaagc 278
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 375 cttgctgtgctctgtgaggttgggacccagtacatactagacaagcaccgtacaccaagc 316

                           
Query: 279 cattccctagtctctg 294
           ||||||||||||||||
Sbjct: 315 cattccctagtctctg 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 695
Length adjustment: 9
Effective length of query: 285
Effective length of database: 686
Effective search space:   195510
Effective search space used:   195510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)