BAC Information

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BAC

Clone NameMSMg01-330N04
Chromosome13 (Build37)
Map Location 115,553,340 - 115,709,564
singlet/doubletdoublet
Overlap geneMocs2, Itga2
Upstream geneLOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik
Downstream geneLOC100040975, Itga1, Pelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330N04.T7 (MSMg01no330_n04.b1)MSMg01-330N04.TJ (MSMg01no330_n04.g1)
ACCAG447276AG447277
length741736
length of high quality
(start - end)
274 (437 - 710)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no330_n04.b1 PHD_FILE: MSMg01no330_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:37 2005CHROMAT_FILE: MSMg01no330_n04.g1 PHD_FILE: MSMg01no330_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,709,281 - 115,709,564)(115,553,340 - 115,553,628)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGCTCTGCCTGTGCCATGCCTGCCTGGATACTGCCATGCTCCT
ACCTTGATGATAATGGATTGACCCTCTGAACCTGTAAGCCAGCCCCAATG
AAATGTTTTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGT
AAAACCCTAACCAAGACAATTAGGTAGTGAACCCTTTTGGAGAAGTGTGG
AAGAGGTTGCTGCAGAACCAAGCTTCAGGGTCACAGGGTTGAATCAAATG
CTAGGGTTGAGTTGACCTGTATAAGTGAGGTACAGAATGTGGAGGCCACA
GAGCTGAGCTGTTTATTTCTAACCCACCCCCACAGATATTTTATTCTCCT
TATATTTACAAGTTGCTCCTATTTATAAAATATGATCACATAAACTATTA
AGTGGACAGGAATGACTTTCATCACCTCAGCTTTTAATTAGTGTAACATC
TGCCGTATCTATTCATTGCTGCTCTTCTTCCTGATCAGTCCCATCAGGAG
ATTATAAAATTTATAGTTATGTCAAAGAAGAAATGTTCTGTTTCACTTAC
TATTTCCATGTTATATTTACGTGCATTTCATTACCTTGAGGTCTCATTTT
CATAGTTTTCCTTATTTTTTCCTCATGAAATTAAAATATTTCTTCAACCC
CATTTTCTTTCATTCTCTCTTTCTTTGACATCAGTCACCAC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTTCACACTAATTTTGGTAAT
TCATTCAAAAGAGGGATTAAGTGCCCCTGGCATTATGCACACACTGTATT
TTGTTTAGAGTTCCATTATCCCAGATGTTCAGAATAAGCAGCTGTGGGCA
TTTTCATGAGGAAAATAAAATATCCCCAGGCACCCCATTAGGTTCATAAA
TTTTAGAACTGGCGGATGACTATAAAACACATATTTTTGCATGTGCACAT
ACACATAGTGATATGTCACTTAAGTACAAGGATATATTCTAAGAAATGTG
TCATTAGGAAATTTTACTTTGTTGCGCCACCCCCCCCAATATAGCTATAG
TAGCAAAGATGACTCCAATGTCTCTAGGTAATATCTTATTGGATCAGCAT
GCGTGTCATCTGTTATTGAGAAAACTGCCATATGCAATGTGTGCTTATGT
TTGTGCTGTGTCAGGAACATAGTGATGCATCAAGCTGAACTAACTATAGG
CCAGGAGGCCCTAAATACCATGCCCAGGGATGGGCTTCTAACCTAAGGTA
AGACTCCCAATCAATATAGCTGTCAACCCAATTTAACACAACCAATCCCA
TAGAGCCTTGTATCGAAGTACCAAAATTATTTCTAAAATGTATCATCTAG
CATCTGGTTTAAATATTCTTCTTTTAATAATTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_n04.b1 MSMg01no330_n04.b1 CHROMAT_FILE:
MSMg01no330_n04.b1 PHD_FILE: MSMg01no330_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:37 2005
         (274 letters)



>mm_chr13_115709225_115709898
          Length = 674

 Score =  453 bits (234), Expect = e-132
 Identities = 267/284 (94%), Gaps = 10/284 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacataaactattaagtggacaggaatgactttcatcacctcagcttttaattagtgtaa 60
           |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 340 cacataaacttttaagtggacaggaatgactttcatcacctcggcttttaattagtgtaa 281

                                                                       
Query: 61  catctgccgtatctattcattgctgctcttcttcctgatcagtcccatcaggagattata 120
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tatctgccgtatctactcattgctgctcttcttcctgatcagtcccatcaggagattata 221

                                                                       
Query: 121 aaatttatag----------ttatgtcaaagaagaaatgttctgtttcacttactatttc 170
           ||||||||||          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aaatttatagctatgtcaaattatgtcaaagaagaaatgttctgtttcacttactatttc 161

                                                                       
Query: 171 catgttatatttacgtgcatttcattaccttgaggtctcattttcatagttttccttatt 230
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 160 catgttatatttacgtgcatttcattaacttgaggtctcgttttcatagttttccttatt 101

                                                       
Query: 231 ttttcctcatgaaattaaaatatttcttcaaccccattttcttt 274
           |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 100 ttttcctcatgaaattaaaatatttcttcagccccattttcttt 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no330_n04.g1 MSMg01no330_n04.g1 CHROMAT_FILE:
MSMg01no330_n04.g1 PHD_FILE: MSMg01no330_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:37 2005
         (291 letters)



>mm_chr13_115553140_115553830
          Length = 691

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccttcacactaattttggtaattcattcaaaagagggattaagtgcccctggcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 tttccttcacactaattttggtaattcattcaaaagagggattaagtgtgcctggcatta 260

                                                                       
Query: 61  tgcacacactgtattttgtttagagttccattatcccagatgttcagaataagcagctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcacacactgtattttgtttagagttccattatcccagatgttcagaataagcagctgt 320

                                                                       
Query: 121 gggcattttcatgaggaaaataaaatatccccaggcaccccattaggttcataaatttta 180
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 321 gggcattttcatgaggaaaataaaatattcccaggcaccccattaggttaataaatttta 380

                                                                       
Query: 181 gaactggcggatgactataaaacacatatttttgcatgtgcacatacacatagtgatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaactggcggatgactataaaacacatatttttgcatgtgcacatacacatagtgatatg 440

                                                            
Query: 241 tcacttaagtacaaggatatattctaagaaatgtgtcattaggaaattt 289
           ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tcacttaagtacaagaatatattctaagaaatgtgtcattaggaaattt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)