Query= MSMg01no330_n04.b1 MSMg01no330_n04.b1 CHROMAT_FILE:
MSMg01no330_n04.b1 PHD_FILE: MSMg01no330_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:37 2005
(274 letters)
>mm_chr13_115709225_115709898
Length = 674
Score = 453 bits (234), Expect = e-132
Identities = 267/284 (94%), Gaps = 10/284 (3%)
Strand = Plus / Minus
Query: 1 cacataaactattaagtggacaggaatgactttcatcacctcagcttttaattagtgtaa 60
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 340 cacataaacttttaagtggacaggaatgactttcatcacctcggcttttaattagtgtaa 281
Query: 61 catctgccgtatctattcattgctgctcttcttcctgatcagtcccatcaggagattata 120
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tatctgccgtatctactcattgctgctcttcttcctgatcagtcccatcaggagattata 221
Query: 121 aaatttatag----------ttatgtcaaagaagaaatgttctgtttcacttactatttc 170
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aaatttatagctatgtcaaattatgtcaaagaagaaatgttctgtttcacttactatttc 161
Query: 171 catgttatatttacgtgcatttcattaccttgaggtctcattttcatagttttccttatt 230
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 160 catgttatatttacgtgcatttcattaacttgaggtctcgttttcatagttttccttatt 101
Query: 231 ttttcctcatgaaattaaaatatttcttcaaccccattttcttt 274
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 100 ttttcctcatgaaattaaaatatttcttcagccccattttcttt 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no330_n04.g1 MSMg01no330_n04.g1 CHROMAT_FILE:
MSMg01no330_n04.g1 PHD_FILE: MSMg01no330_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:37 2005
(291 letters)
>mm_chr13_115553140_115553830
Length = 691
Score = 520 bits (269), Expect = e-152
Identities = 284/289 (98%)
Strand = Plus / Plus
Query: 1 tttccttcacactaattttggtaattcattcaaaagagggattaagtgcccctggcatta 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tttccttcacactaattttggtaattcattcaaaagagggattaagtgtgcctggcatta 260
Query: 61 tgcacacactgtattttgtttagagttccattatcccagatgttcagaataagcagctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcacacactgtattttgtttagagttccattatcccagatgttcagaataagcagctgt 320
Query: 121 gggcattttcatgaggaaaataaaatatccccaggcaccccattaggttcataaatttta 180
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 321 gggcattttcatgaggaaaataaaatattcccaggcaccccattaggttaataaatttta 380
Query: 181 gaactggcggatgactataaaacacatatttttgcatgtgcacatacacatagtgatatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaactggcggatgactataaaacacatatttttgcatgtgcacatacacatagtgatatg 440
Query: 241 tcacttaagtacaaggatatattctaagaaatgtgtcattaggaaattt 289
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tcacttaagtacaagaatatattctaagaaatgtgtcattaggaaattt 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|