Query= MSMg01no331_i24.b1 MSMg01no331_i24.b1 CHROMAT_FILE:
MSMg01no331_i24.b1 PHD_FILE: MSMg01no331_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:29 2005
(697 letters)
>mm_chr13_11720916_11722012
Length = 1097
Score = 1253 bits (648), Expect = 0.0
Identities = 684/698 (97%), Gaps = 5/698 (0%)
Strand = Plus / Plus
Query: 4 attcattacatcacaatctgaccacaaggaataaattttactgtgttattaaattttaaa 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 attcattacatcacaatttgaccacaaggaataaattttactgtgttattaaattttaaa 263
Query: 64 tttttgtttctctctaaagacttattgtttattgatataattaacaattattgcaaatcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttttgtttctctctaaagacttattgtttattgatataattaacaattattgcaaatcc 323
Query: 124 aagctcctagaaagcttggaattaaatgtgctggtagtcatggcataatggcaagatgtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagctcctagaaagcttggaattaaatgtgctggtagtcatggcataatggcaagatgtg 383
Query: 184 gcatgggcttgtaaattaaaataattgttgagattctttcctctgtggaatgtaatactt 243
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 gcatgggcttgtaaattaaattaattgttgagattctttcctctgtggaatgcaatactt 443
Query: 244 tatctctttgtcttactgcattatgtataattatattaaattttaagtatcaaatgagaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatctctttgtcttactgcattatgtataattatattaaattttaagtatcaaatgagaa 503
Query: 304 aagatgatgatatatatattcaagtcaaatgtt----cctatatagtattttactatgaa 359
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 aagatgatgatatatatattcaagtcaaatgttatttcctatatagtattttactatgaa 563
Query: 360 accaacagaaacttatctcctcttcaacatttcccaagtgctcagataaagagtaataaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 accaacagaaacttatctcctcttcaacatttcccaagtgctcagataaagagtaataaa 623
Query: 420 aatttgatgccttaaccaaatatttaggtgttagtaactgtgaaactgtccttagaaat- 478
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 624 aatttgatgccttgaccaaatatttaggtgttagtaactgtgaaattgtccttagaaatt 683
Query: 479 aaaaaaaaatgtatggacaaacagaaaactcagaaaaattaaaaataggcatgaccttca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaaaaaaaatgtatggacaaacagaaaactcagaaaaattaaaaataggcatgaccttca 743
Query: 539 gatttccaggacaaatagcttcattttaagccgtttaaggtggccggctgaaggccacct 598
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 744 gatttccaggacaaatagcttcattttaagccgtttaaggtgtccggctgaaggccacct 803
Query: 599 agcacataggtgaccactcaggcctctgaaactgtacagacagctctgcacagcaggctc 658
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 804 agcacataagtgaccactcaggtctctgaaactgtacagacagctctgcacagcaggctc 863
Query: 659 actctgctgtgaaagcccctctccgtggacttctatga 696
|||||||||||||||||||||||||||||| |||||||
Sbjct: 864 actctgctgtgaaagcccctctccgtggacatctatga 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_i24.g1 MSMg01no331_i24.g1 CHROMAT_FILE:
MSMg01no331_i24.g1 PHD_FILE: MSMg01no331_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:29 2005
(573 letters)
>mm_chr13_11894610_11895582
Length = 973
Score = 818 bits (423), Expect = 0.0
Identities = 519/587 (88%), Gaps = 58/587 (9%)
Strand = Plus / Minus
Query: 1 cactcgagacataagagcttttctatgggattttaaaagcttcttcccagttctgtgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cactcgagacataagagcttttctatgggattttaaaagcttcttcccagttctgtgctg 491
Query: 61 tccttacacacagagagagacagagacagagatgaagacagagagagagagagagagata 120
|||||||||||||| |||
Sbjct: 490 tccttacacacaga-------------------gaa------------------------ 474
Query: 121 gacagacagacagacagacagacagcactctgcatgccatggctacagacaattggcacc 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 473 -acagacagacagacagacagacagcactctgcatgccatggctacaaacaattggcacc 415
Query: 181 atcattattggcagagatgagtaacaatgggtgaatagtttatgtattattgttgaaaat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 414 atcattattggcagagatgagtaacaatgggtgaatagtttatgtattattgttgaaatt 355
Query: 241 acatttgattgtgtttatgtgtatacatgtgtgcacgtgtgtgtgtgtgcgcgcacgtat 300
||||||||||||||||||||||||||||||||||||||||||||||||| | | | || |
Sbjct: 354 acatttgattgtgtttatgtgtatacatgtgtgcacgtgtgtgtgtgtgtgtgtatgtgt 295
Query: 301 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagcatgctcgtatggccaagcatgcca 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 294 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagcatgctcgtatggtcaagcatgcca 235
Query: 361 cagtgtacttgtagaggtcagaggacaacttgaggcttctaccgtgtgtatcctgggggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cagtgtacttgtagaggtcagaggacaacttgaggcttctaccgtgtgtatcctgggggt 175
Query: 421 acatactcagattctcagggctggcagcaagcacctttatcagcttga------------ 468
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 174 acatactcaggttctcagggctggcagcaagcacctttatcagcttgagccattttgctg 115
Query: 469 gcccaatggcaggacaatag--aaaaaaaaaaggaacatggttttcaggtaccttttcaa 526
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 114 gcccaatggcaggacaatagaaaaaaaaaaaaggaacatggttttcaggaaccttttcaa 55
Query: 527 gttgttgggcttggttgtaagtgctttacccattgacccctcttgct 573
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 gttgttgggcttggttgtaagtgctttacccattgacccctcttgct 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
