BAC Information

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BAC

Clone NameMSMg01-331J23
Chromosome13 (Build37)
Map Location 21,353,326 - 21,353,886
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331J23.T7 (MSMg01no331_j23.b1)MSMg01-331J23.TJ (MSMg01no331_j23.g1)
ACCAG447871AG447872
length742746
length of high quality
(start - end)		700 (40 - 739)567 (72 - 638)
definitionCHROMAT_FILE: MSMg01no331_j23.b1 PHD_FILE: MSMg01no331_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:33 2005CHROMAT_FILE: MSMg01no331_j23.g1 PHD_FILE: MSMg01no331_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCT
GAATTAAAATCACCGGGTCCTGGGCTTTGGGGGATGGTGAGATGGTGCCT
TTAATGATTGTCTATTTAAATTGTTTTTCTGATCTTGACCAGTGGCACCC
ATGGAGAACATTACCCAATTGTATATTTTCCAAGTTGGTGGCGGATAGGT
TTTTAAAGTATGTCCCTATAATTCTCTGAATTTCCTTTATGTCTGATGTT
AAGTCCCTTTTTTCATTTCTGATATAATTCATTTGAATATTCTCTCTGTG
TCTTTTAGCTAGTTTGGATAAGTGTTTACCTACTTTGTTGATTTTCTCAA
AAAACCAACTCTTTTGTTTCATTGAGTCTTTGTATTGTTCTTTTTGTTTC
TAATTTATTGAATCCACCCCTGTGTTTGATTATTTCCTGGCATCTATTCC
TCTTGGGTATGATTAGTCCTTTTTGTTCTAGAGTTTTCTCATGTGCTGTG
AGGTTTCTAGTATGAGATATTTCCAATTTTTTTATGTAGGCCCTTATTGC
CATAAACTTTCCTCTAAGCACTGCTTTCAATGTGTTGAATAAGTTTGGGC
ATGCTGTGTATTCATTCATATTCATTGAATTCTAGAAAGTCTTTCATTCC
TTTATTTCTGTTTTTGAAGGGCTTTCTAACAGCCCTGAGCATTGCAAACA
TAACACTAATTGATTCTGCCCTTCTTCCTCCTTCTCTCTTGT

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAATCCCAGCAACCACATGGTGGCTCACA
ACCATTCATAACGACTATGGCCTCAAGTAGAGGAAGAAAAAAATAAAATA
AAAAGGAGATCACCTCCCTGTCTTTGATTTTAAAATATTTCTAGGGATTG
CTTGTATGTCTGTAACTATTTTAGTGGCCAATGGTGTCTCAGCCAGGCTA
AGAATGGAAGAAACTTGCAGGAAAACTTCTTGATGCTGCCCATATAGGTG
TCCCCCTTTAGTACTACCGCTAAGGTGAAACTGGGATCTAGACTCCTTCA
TGAAGAAGGAGGATTTATTAAGAAATATGATCGCAAACTCTAGATATGAG
AGTAGGTGTCCAGAGAAATGCCTATATGTTGGAACAACAGTAGTGAATGA
ATTTTTAATTTTGTTTGTTTTGAAGACTTAGTCTCAGTGTATAACTCTGA
CTATAAACCACAATGACCTTAAATTCACAGAGATTTGCCTGCCTCTGTCC
CAAGTGCTGGGTGCCTTGGCAGTCCCAATCTGGTGCTGGAGTCCTGGAGG
ATATCTAAGGAACAGTTGCTCTTTAGCCTACATTGGAATCCCAAAGAAGT
CGGTTCCAATACCAGCATAGGAATAGCTCAGCAACAGGATAGATAGATTT
GCCAGAGAGTGTGAAGGCAAGCAAGCAAAAGTAGAGCTTTCATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_j23.g1 MSMg01no331_j23.g1 CHROMAT_FILE:
MSMg01no331_j23.g1 PHD_FILE: MSMg01no331_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:33 2005
         (567 letters)



>mm_chr13_21353263_21354223
          Length = 961

 Score = 1046 bits (541), Expect = 0.0
 Identities = 558/567 (98%), Gaps = 6/567 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatcccagcaaccacatggtggctcacaaccattcataacgactatggcctcaagtaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 624 aaatcccagcaaccacatggtggctcacaaccattcataacgactatggcctcaagcaga 565

                                                                       
Query: 61  ggaagaaaaaaataaaataaaaaggagatcacctccctgtctttgattttaaaatatttc 120
           ||||||||||||      ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaagaaaaaaa------aaaaaggagatcacctccctgtctttgattttaaaatatttc 511

                                                                       
Query: 121 tagggattgcttgtatgtctgtaactattttagtggccaatggtgtctcagccaggctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tagggattgcttgtatgtctgtaactattttagtggccaatggtgtctcagccaggctaa 451

                                                                       
Query: 181 gaatggaagaaacttgcaggaaaacttcttgatgctgcccatataggtgtccccctttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 450 gaatggaagaaacttgcaggaaaacttcttgatgctgcccatataggtgtccccctttaa 391

                                                                       
Query: 241 tactaccgctaaggtgaaactgggatctagactccttcatgaagaaggaggatttattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tactaccgctaaggtgaaactgggatctagactccttcatgaagaaggaggatttattaa 331

                                                                       
Query: 301 gaaatatgatcgcaaactctagatatgagagtaggtgtccagagaaatgcctatatgttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gaaatatgatcgcaaactctagatatgagagtaggtgtccagagaaatgcctatatgttg 271

                                                                       
Query: 361 gaacaacagtagtgaatgaatttttaattttgtttgttttgaagacttagtctcagtgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gaacaacagtagtgaatgaatttttaattttgtttgttttgaagacttagtctcagtgta 211

                                                                       
Query: 421 taactctgactataaaccacaatgaccttaaattcacagagatttgcctgcctctgtccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 taactctgactataaaccacaatgaccttaaattcacagagatttgcctgcctctgtccc 151

                                                                       
Query: 481 aagtgctgggtgccttggcagtcccaatctggtgctggagtcctggaggatatctaagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 150 aagtgctgggtgccttggcagtcccaatctggtgctggagtcctggaagatatctaagga 91

                                      
Query: 541 acagttgctctttagcctacattggaa 567
           |||||||||||||||||||||||||||
Sbjct: 90  acagttgctctttagcctacattggaa 64


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 961
Length adjustment: 10
Effective length of query: 557
Effective length of database: 951
Effective search space:   529707
Effective search space used:   529707
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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