BAC Information

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BAC

Clone NameMSMg01-332D24
Chromosome13 (Build37)
Map Location 48,268,373 - 48,268,646
singlet/doubletsinglet
Overlap genenone
Upstream geneIbrdc2, 4931429P17Rik
Downstream geneId4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332D24.T7 (MSMg01no332_d24.b1)MSMg01-332D24.TJ (MSMg01no332_d24.g1)
ACCAG448331AG448332
length1,3321,291
length of high quality
(start - end)
---274 (132 - 405)
definitionCHROMAT_FILE: MSMg01no332_d24.b1 PHD_FILE: MSMg01no332_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:30 2005CHROMAT_FILE: MSMg01no332_d24.g1 PHD_FILE: MSMg01no332_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGAAGAGCGNCNNAACCACTGGGCGCCACAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAANTACGAGNNCGAANAGGAAAGTAGTCACGGCCCCCCCCGG
NNGCCCGGGNNNGNNNGNNNNNGGNNTGCATTAAAAAAACCCCCGCCCAN
NAANANNNNAGANAAANNGCCGGNCAANGGGCACCGGCAGAAAGGAGGCC
CGACAAACGGAGACACGCAAACAGAGACAAAAACACGAAGGACCCCACAC
AAAAAGGAAACGGAGCGCGAACGACANCAACACGANACACGCACGAACAC
GGAAGAAAGGAGACAGAGCGGCCCAGCACNCCAACGACGAAGGACAGAAA
ACACCCGGCGAGCACACGAGGCCGCAGACAACGCGCGCACCGCGAACACA
AACGCCCAGAACCACCCCGGAACCGAACCCACGAGCGCCAACCGAATATT
GCACGCCCACGGCCCACAANCCCGCACCCACCCACCCGGGAAAAAACCGG
CCGCCCACCAACCACNCCCGCAAACAAAGCCACAAGCGCCCCACACAGCG
CCAACACCACGCCGCAGCCGAACCAACCGAAGCCCCCCCCCCCGCCACCA
CCAAGCGAACCCCCCCCCCACCCCCCGCACCAACAACCGCACCCCGCCGC
CCCCACCACCCCCCCGCCCCCGGCAGCACCCCACCCCCGCCCCGCCCCCC
CCAACCACCCCCACACGACCCCCCACCCCCGCCCCCCCCCGCCCCCCCCG
GCCCCCCCCCCCCCCCCCACCCCCCCCACACGCCCCCCGCCCCCACCCCC
CCCCCCCACCCCGCCACCCCACCCCCCCCCCCCCCACCCACCCCCCCCCC
CCCCCCGCCCCGGCCCACCGCCCCCCGCCCCCCCCCCCCCCCCCCACCCC
CACCACCCAACCAACCCCCCCCCCCCCCCCCCCACAGCCCCCACCCCGCC
CCACCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CACCCCCCACCCCGCCCCGACCCACCGCCACCCCCCCCGCCACCCCCCCC
CCCCCCACCGCACCACCCCCCCCCCCACGCACACCCCCCCCCCCCCACCC
CCCGCCCCCCACACACCCCCCCCCCCCCCCCCCCCCCCCACCCACCCCAC
ACCACACACCCACCCCCCCCCACACCCGCCCAACCGCCCCCACCCCCCCC
GCACCACACCCCCGCGCCCACACGCCCACCCACCCCCGCCCCACCCCACG
CGCCCCCCACAGCCCGCCCCACAACCCCCCGACCCCGCGCCCCGACCCCC
CACCCNCCGGCACCACCACCCACAACCCCCCC
CGGGTCCCCTNNAACGATGCNAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTATAAAGCCCTCCTGGNCCACGNGA
GCCCTATCTCAAAATCTTATGAATACCCCGATTTGAACTCCAAGATCAAT
GTGTAATGTCTCCCCCAGTCCTCACCAAGGCACATGTTTTAAAGAGCATG
GGCAACTGTTGGAGGTAGTGAGGACCACACTCCAAATGCTGATGGTGTCT
GCCAGGCGCCATTTTAAGATGAAGAGGATGTGTGTAGGCAGAGCAGTGGC
CTTGGAGCCGCAGTCTCTTATCTTTGCCCTCTCTCTGGGGACGAGTCATA
ATGTCCCAAGTCGTTTTTGATTGTTCCAGTTTGGGGTGAGGGTGCTACTG
GTATCCTTTTACAGGAGGCTTGGGTGAGCCCAACATCCCCATCCCCCACC
CCCCACAGTAAAGAACCTGGCCCAATGGTGAGGTCTTCCCTTCAGTGTAA
TCTGGGGGATGGCCTGTCCTGTGAGGTTCTGCTACTCCAGGATCTCAAGG
TGGGTAGAGAGAAAAGGCTAGGGACAGTGACCGATCTCTGTACTCTCGGC
CAAAATAAAAGGAGAGAGACAGACATGACATGAAGGCAAAAATACCAGGA
TCTGCTCTGCTGACATTTGCTTGAGGGCCTAAGTCCAGGGCCCGTGCTCA
TTAGCAAAAGTATCGTGTGTGTGTGTGTGCGTGTGTGTCCGCGCCGTCCC
CCCCCTCTCCTCCCTCTCTCTCCTCCCCCCTCTCCTTCTCTCTTCTATCC
CCCCTACTTCTCCCCTACCTCTCCCCTCTCTCCTCTCTCCCCCTTCCCCC
TTCCCTCACCCCTCCCCCTCTTCTCTTCCTCCTTTTTTCCTTCATCTTTC
CTCTTCCCCTTTCTTCCTTCTCCCTCCCCTCTCCCTCCATCTTCCTCTTC
CTTCCTCTCCCCTCTTCCTCTCCCTCCCATTCCACTCCACCCCCTCCCCA
CCTTCTCTCCTCTCTACCCTCTTTTCCTCTTCTCTCTTTCCTCCCCCTCT
CTTCTTCTCCTTCCTTCCCTCCTTCCTTCCCTTCTCTTCCACCACATCAT
CTACCCTTTCCCTTCTTCTCTCTCCCTCCTCCTATCCTCTTCCCTCCCTC
TCCTTCTCTCCCCCCTTCCTCTCTTCCTTCCTTCATTCTTTCTTCCATTC
ACTCCTCCCACTTTATCTTTATACCCTCCTCCCTCTCTTCTCTCTTCTCT
CTCTCCACTTCCCAATCCTCTTCTACTCTCTCTTTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_d24.g1 MSMg01no332_d24.g1 CHROMAT_FILE:
MSMg01no332_d24.g1 PHD_FILE: MSMg01no332_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:30 2005
         (274 letters)



>mm_chr13_48268256_48268929
          Length = 674

 Score =  514 bits (266), Expect = e-150
 Identities = 272/274 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgaactccaagatcaatgtgtaatgtctcccccagtcctcaccaaggcacatgtttta 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tttgaactccaagatcagtgtgtaatgtctcccccagtcctcaccaaggcacatgtttta 332

                                                                       
Query: 61  aagagcatgggcaactgttggaggtagtgaggaccacactccaaatgctgatggtgtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aagagcatgggcaactgttggaggtagtgaggaccacactccaaatgctgatggtgtctg 272

                                                                       
Query: 121 ccaggcgccattttaagatgaagaggatgtgtgtaggcagagcagtggccttggagccgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccaggcgccattttaagatgaagaggatgtgtgtaggcagagcagtggccttggagccgc 212

                                                                       
Query: 181 agtctcttatctttgccctctctctggggacgagtcataatgtcccaagtcgtttttgat 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 agtctcttatctttgtcctctctctggggacgagtcataatgtcccaagtcgtttttgat 152

                                             
Query: 241 tgttccagtttggggtgagggtgctactggtatc 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 151 tgttccagtttggggtgagggtgctactggtatc 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)