BAC Information

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BAC

Clone NameMSMg01-332O03
Chromosome13 (Build37)
Map Location 31,648,337 - 31,649,092
singlet/doubletsinglet
Overlap genenone
Upstream geneDusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257, LOC100041266, G630018N14Rik, LOC100042491
Downstream geneFoxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, Gmds, LOC666212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332O03.T7 (MSMg01no332_o03.b1)MSMg01-332O03.TJ (MSMg01no332_o03.g1)
ACCAG448793AG448794
length1,2381,274
length of high quality
(start - end)
62 (426 - 487)746 (89 - 834)
definitionCHROMAT_FILE: MSMg01no332_o03.b1 PHD_FILE: MSMg01no332_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:49 2005CHROMAT_FILE: MSMg01no332_o03.g1 PHD_FILE: MSMg01no332_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACAACCCTCGNGNNNCATTCGGCGCTAAGACTCCTATGGGAGAGGA
TCCGCGGAATTCTCTCAAANAGTAACTCTCTACCTAACAGGNTCTCTTGN
GNGCGNGCTGGAGACTGCCATATAAAAGNTAGAGNNTAATAAATNNTGTG
GNNTTAAGTTGTTNNNTAAGGTATTGGTGNNNANNTNATAAAANTATTAA
TTAATTAAGTTNGAAANAGTANAATTGGNAGNNTTTGNTTNTGGNNAGAG
NTNNAGNNNTGAGTGTGANNANGTGNTNTGGATGGTGGGNNNNTTGTANA
AAGGNANAAGAGAGTTTNTTGGNNAAGNTAAAGAAGTNTTTTNTAGGGTN
ATGGAAAAGNTGNGATGTNATTGGAGAGATTNTTNTGTGNAGTNAAAANN
TGGAGTTTATGTGTTAATGGAGAGNGTGTTTTAAANNAGTTGTGGTTTAG
ANATATAATAGAATTAAAATTAAGAAANAAAGAAAAGTTGGNTTTNATAA
GGAAAATGANAGTTNAGTAGTNGGTTAGAAATANTATATAAAATAGATTG
AATAATNNTTATNNNANATGNTGGGGGNNAGAGTGGTTTTGATTTGGANT
TTTTTTTTTTGTNTTNAGATTTTGGAATAATTTGNATGNANANAGTGTAA
TATGTTGGNAANAAGAANNAAGTTTAAANNNAAAATTNATTTTTGTTTTA
TATANATNTTGTAGAAATAGNNTGGAGGTAAGTTTATNAAATGTTTTAAA
TAATTNTGTGGATGAAAAGAAGANTTATGATGTGGAAGTTTTTATTTGGA
GTGTGATTTTAGGATTTAGAATTGGGGATTTTGAAGAATTTTAAAGTTGG
AGATTGGGAAATTAAAATGGTNAATTGAANTGGATGGTTTTAATTTTTAT
GAAATTTTGAAAAGAAAAAAAAGGGGGATTTAGATTTAAAGNTGGTTTAA
TTANAAAAAAAAGTTTTTGAATTTTTTTGAGGGATTAATAAAAGAAAAAG
NGAAAGGTGGGGGGTTTNAATGAATTTTTTTTAATAGAAAAAGGGAAGGG
GGAAATTGTTGTTTATTTTGNNAANAANNAANNAAAAAAAAAAAAATAAA
AGTTANAAATATTGTGTTTATGGGGGGTTGGATTGAAAGGGGTTAATATA
AAATAAAANNTTTGGAATTGGAAATTAAAAAAAATTTGTGGTAATGGGGG
AAAAAGAAAAATTTTTGAATTTTTTTTTAAAAAAGTTT
CCCCTCATTTTNANAAACAGGTGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGGCTCCACTCCTCCCC
CATCACAAGCTCCAAACCCCTCTGTCAGCTTAATAGGGACGAGGAATAGG
CATTTCCTCGCCTAACCAAGATCAAGGTAAGGAGAGTATCTGCTGCAGCT
AGTGAGAGGTGGTGACGGATGAAGTGCGGGACTGGCAGTGAGGTGGGCTA
TTCTACTTGGCAGCCACTGGTGTTCCTAGGCCTGGAATCTCCCTATTGCC
TATTGAGTCTTAACCCTCCTAAATGTATCTCCTCCATAAAACAGGCACGC
TGAGTTCAAATAAGGACAACCTTCATTAACAATGTCTTTTATCCCTGGCC
AAATCAATGCTTTGTCACCTTGCACTGGGCTAATTCTCATCCCAACGCAC
TCCCCTGGCCAGGACCTAGGGACCATCCATTTGCGGGCAGGAGCTAAGAG
GAACCCCTTGAAAGAGGCTGTTTTTCGAGGCTGGAGGAACGCACCACGTG
GTAAACAGTTACTCCCTGCATACTACAAAACATCAGATTCCTCCTGGCTG
TCAAGATGCCCACTGCATTCTGAGCGCCTTTACGGCTTCTTGACTTAAGA
TAAGAGAAGCTTGTGTATGCTTTCCACACAAATGGTGGAAAGTAATAAAA
TAAACTTCAAAGATGCTCTCCCACATAGTCGCAGCCTCAACATTATTCGC
AACAAAAGCAGGAAGAAGGAGGAAGCTGGCGTGGTAGGCATAGGGTCAAA
AGTGCACCCTTCCTAGTGCAAGGCCCCTTTCCTTGGAGAACTGACACAGA
GTTGTCAGGGAGTCGGAGGAGTTGCAGAAGGGGCCTCCTTTCCTGTTTGA
CACCCGTGCCACTAAAGCCAAGCAAGTTCTAGAGTACAGTTGCAGACCAA
TAGCGATAAACACGCCTTGCCCTTTGCCCATGCCCCAAGGAAACACATCC
TCCCGTGATTCTTGTTGATTGCTAAAACCCGGGCACTGCATGGCTGTGGG
CTTTTGCCCCAGGTCCAAGAATTTCGAAAGGGACTCTAGTGAGGCAAATC
CGGGCCCCCTTCTTTGAAAACGGCTTCCCGGTAAAAGTTGGGGGGGTGGC
CTCCTTCCCCCAAATCCCCCGCCCGGTTTGGACAAATAATGATGAAATCC
CGAACTCTGCCTTAAATAAAAGAGCTTTTCCCCCCAAGAACCTAAAATTT
TCCTCCCCGGGTTTTTTTTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_o03.g1 MSMg01no332_o03.g1 CHROMAT_FILE:
MSMg01no332_o03.g1 PHD_FILE: MSMg01no332_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:49 2005
         (746 letters)



>mm_chr13_31648147_31649292
          Length = 1146

 Score = 1309 bits (677), Expect = 0.0
 Identities = 732/757 (96%), Gaps = 15/757 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ctcctcccccatcacaagctccaaacccctctgtcagcttaatagggacgaggaataggc 63
           ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||
Sbjct: 191 ctcctcccccatcacaagctccaaacccaacagtcagcttaatagggacgaggaataggc 250

                                                                       
Query: 64  atttcctcgcctaaccaagatcaaggtaaggagagtatctgctgcagctagtgagaggtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atttcctcgcctaaccaagatcaaggtaaggagagtatctgctgcagctagtgagaggtg 310

                                                                       
Query: 124 gtgacggatgaagtgcgggactggcagtgaggtgggct---attc--t--acttggcagc 176
           ||||||||||||||||||||||||||||||||||| ||   | |   |  | || |||||
Sbjct: 311 gtgacggatgaagtgcgggactggcagtgaggtggactggcagtgagtgga-ttagcagc 369

                                                                       
Query: 177 cactggtgttcctaggcctggaatctccctattgcctattg-------agtcttaaccct 229
           |||||||||||||||||||||||||||||||||||||||||       ||||||||||||
Sbjct: 370 cactggtgttcctaggcctggaatctccctattgcctattgcctattgagtcttaaccct 429

                                                                       
Query: 230 cctaaatgtatctcctccataaaacaggcacgctgagttcaaataaggacaaccttcatt 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cctaaatgtatctcctccataaaacaggcacgctgagttcaaataaggacaaccttcatt 489

                                                                       
Query: 290 aacaatgtcttttatccctggccaaatcaatgctttgtcaccttgcactgggctaattct 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aacaatgtcttttatccctggccaaatcaatgctttgtcaccttgcactgggctaattct 549

                                                                       
Query: 350 catcccaacgcactcccctggccaggacctagggaccatccatttgcgggcaggagctaa 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 catcccaacgcactcccctggccaggacctagggaccatccatttgcgggcaggagctaa 609

                                                                       
Query: 410 gaggaaccccttgaaagaggctgtttttcgaggctggaggaacgcaccacgtggtaaaca 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaggaaccccttgaaagaggctgtttttcgaggctggaggaacgcaccacgtggtaaaca 669

                                                                       
Query: 470 gttactccctgcatactacaaaacatcagattcctcctggctgtcaagatgcccactgca 529
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 670 gttactccctgcatactacaaaacatcagattcctgctggctgtcaagatgcccactgca 729

                                                                       
Query: 530 ttctgagcgcctttacggcttcttgacttaagataagagaagcttgtgtatgctttccac 589
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 730 ttctgagcgcctttacggcttcttgacttaagagaagagaagcttgtgtatgctttccac 789

                                                                       
Query: 590 acaaatggtggaaagtaataaaataaacttcaaagatgctctcccacatagtcgcagcct 649
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 790 acaaatggtggaaagtaataaaataaacttcaaacatgctctcccacatagtcgcagcct 849

                                                                       
Query: 650 caacattattcgcaacaaaagcaggaagaaggaggaagctggcgtggtaggcatagggtc 709
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 caacattattcgcaacaaaagcaggaagaaggaggaagctggcgtggtaggcatagggtc 909

                                                
Query: 710 aaaagtgcacccttcctagtgcaaggcccctttcctt 746
           |||||||||||||||||||||||||||||||||||||
Sbjct: 910 aaaagtgcacccttcctagtgcaaggcccctttcctt 946


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space:   836096
Effective search space used:   836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)