BAC Information

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BAC

Clone NameMSMg01-333C05
Chromosome13 (Build37)
Map Location 20,888,739 - 20,889,083
singlet/doubletsinglet
Overlap geneAoah
Upstream geneGpr141, LOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333C05.T7 (MSMg01no333_c05.b1)MSMg01-333C05.TJ (MSMg01no333_c05.g1)
ACCAG448977AG448978
length729725
length of high quality
(start - end)
348 (74 - 421)351 (77 - 427)
definitionCHROMAT_FILE: MSMg01no333_c05.b1 PHD_FILE: MSMg01no333_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:14 2005CHROMAT_FILE: MSMg01no333_c05.g1 PHD_FILE: MSMg01no333_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGGATCCGCGGAA
TTCCATGTCATTTATCACAATCCCATCTGCCCTCTGGACTATGTGTTGCC
TTTCCAAAGGTTATAGAATCAGTAATAAGCCAGGTTCATTTTGTAAAACA
TTAATTTCAGTACAGGATGATTTACAAGCCAGATAGTCCTTCTGCTTTTT
CATCGACAGTTAAATTAATTCATTGAGTTTTGAGGGTTTGAAGGTACTTT
TTAAATCTGAGGAAGCCATAAGGGTTTCAAAGCTTCATTCATGCTCTTGT
TCATGTTTTGTTAAGCATGCCCTCTGAATCAGACCATCTTCCCTTCGGCA
TACCCCAGAAACTCTGGTTGGAGTAAGAGACAAAGGTGGTTCTGGGGTCT
CAAAATAGTATAAATGGGCAAACACCCTCATTCACAGAGACTGGAGACAG
AGCTGTTAGACAGAGCTGGCAGGGAAGGGTGTAAGTCATGGTCATAATTT
GGGGACACACAGATTTCAGTTTGTCTGTCTGTAACTGGGCAGCAGCTCAC
AGACACAGTTTCTGTGGGTACCAGGAAGCATTTCCTTTTGCCATTCACAT
TCCCTGTGGATGCCAGGAGTTCTCCTCTTCCTTTCCTCACCTCTCAACAG
TGATTTAGTTCTCANACCACCACAATACTCACGGATCTCAGACTTAGAGT
GGGCTCTGTCCTTAGNCCTAAGAGCTCCT
CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAACAAAGAGAAAGAAAAAAC
AAAAAGCAACCAACCAATCAAACCCAAATGACACATTCAAAAAATGGGCT
TGGAATTTGAACAGAAAGGTTTTTAAAAAAGACATGAAAATGTCTAAGAA
ATATCTTTTAAAAGTTTGTTGTTTTTAGCCGTTAGCAAAATGCAACTCAA
AGCAACAATGAGAGTTCATTTTACCACAGTCAGAATAGCAAAGACCAACC
AAGCAACAGACAGGAATGCTAGAGAAGGTGTATGAGGAAAAAGATGGGCC
TGCAAACTGGTCCAGCCACTTTGGAAATCAATGTTGGGAACTCTCAAAAG
GCTAAACAAACACCTATTATATAACCCACCCCCCCCACTTTTCAGCATAC
TCCTAGGGGGTTTGACATCCTACTCTACAGATACTTGCTTAGCCATGCTC
ATTGCTGATCTATTCATGATAACTTAGAAATGAAAACAACTGAAATGTCC
TTTGATGTTCTTCAGTTGCTGAATGGATAATGAAAATGTGGTATATATAC
ACACTGGACTAGTATTTGCTTTGTAAAGATCACAAGGGGACCATGCATAG
GGGAGGAACACTATAGAGGGGAATAAAAGGGTACATGCGATTTGGAGGAG
GAATTGGAAAAAATGATGATGGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_c05.b1 MSMg01no333_c05.b1 CHROMAT_FILE:
MSMg01no333_c05.b1 PHD_FILE: MSMg01no333_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:14 2005
         (348 letters)



>mm_chr13_20888539_20889286
          Length = 748

 Score =  659 bits (341), Expect = 0.0
 Identities = 344/345 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctgccctctggactatgtgttgcctttccaaaggttatagaatcagtaataagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctgccctctggactatgtgttgcctttccaaaggttatagaatcagtaataagccag 260

                                                                       
Query: 61  gttcattttgtaaaacattaatttcagtacaggatgatttacaagccagatagtccttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcattttgtaaaacattaatttcagtacaggatgatttacaagccagatagtccttct 320

                                                                       
Query: 121 gctttttcatcgacagttaaattaattcattgagttttgagggtttgaaggtacttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttttcatcgacagttaaattaattcattgagttttgagggtttgaaggtacttttta 380

                                                                       
Query: 181 aatctgaggaagccataagggtttcaaagcttcattcatgctcttgttcatgttttgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatctgaggaagccataagggtttcaaagcttcattcatgctcttgttcatgttttgtta 440

                                                                       
Query: 241 agcatgccctctgaatcagaccatcttcccttcggcataccccagaaactctggttggag 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatgccctcagaatcagaccatcttcccttcggcataccccagaaactctggttggag 500

                                                        
Query: 301 taagagacaaaggtggttctggggtctcaaaatagtataaatggg 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagagacaaaggtggttctggggtctcaaaatagtataaatggg 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)