Query= MSMg01no333_k14.b1 MSMg01no333_k14.b1 CHROMAT_FILE:
MSMg01no333_k14.b1 PHD_FILE: MSMg01no333_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:53 2005
(371 letters)
>mm_chr13_115785946_115786716
Length = 771
Score = 563 bits (291), Expect = e-165
Identities = 343/367 (93%), Gaps = 14/367 (3%)
Strand = Plus / Minus
Query: 5 gaattcattaacttcaccccaccatctgcaaggatgtggtgggcaggatctgctcagggt 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 448 gaattcattaacttcatcccaccatctgcaaggatgtggtgggcaggatctgctcaggtt 389
Query: 65 ttggtaggcaaggctgagtgagatcttcctcctctgtgggaagcctggctgcagccattc 124
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 388 ttggtaggcaaggctgagtaagatcttcctcctctgtgggaatcctggctgcagccattc 329
Query: 125 taacctgtagctcaggtatcaggagagtcagactgagcagctctacaggcagccctgttg 184
||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 328 taacctgtagcccaggtatcaggagagtcagactgagtaggtctacaggcagccctgttg 269
Query: 185 agacaggcttgggccccagaggaccagtgtcctttatgatagct-cagccataactcaca 243
|||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 268 cgacaggcttgggccccagaggacccgtgtcctttatgagag-tacagccataactcaca 210
Query: 244 ggggctcgacagagggccgccacagtctgagaagccccattaagtacacagagttcattt 303
||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggggc----ca--------ccacagtctgagaagccccattaagtacacagagttcattt 162
Query: 304 ctaactccacccagcctgaatgtcacattctaattgaagttattttcacctacatcagca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ctaactccacccagcctgaatgtcacattctaattgaagttattttcacctacatcagca 102
Query: 364 tcactca 370
|||||||
Sbjct: 101 tcactca 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_k14.g1 MSMg01no333_k14.g1 CHROMAT_FILE:
MSMg01no333_k14.g1 PHD_FILE: MSMg01no333_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:53 2005
(675 letters)
>mm_chr13_115627053_115628127
Length = 1075
Score = 1203 bits (622), Expect = 0.0
Identities = 662/682 (97%), Gaps = 14/682 (2%)
Strand = Plus / Plus
Query: 1 aaaacaggagccttcgggagcgccacattagccatg---ttttcttaccttccacaaacc 57
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 201 aaaacaggagccttcgggagtgccacattagccatgatgttttcttaccttccacaaacc 260
Query: 58 tgcagtcatagccaacagcaaaaggattcccgcaattatgctgcctatgataacccctgt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagtcatagccaacagcaaaaggattcccgcaattatgctgcctatgataacccctgt 320
Query: 118 cggtacttctgctttctccgtgggtttcattatcgtgaggggaatctgcgaatgaacaca 177
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 cggtacttctgctttctccgtgggtttcattatcatgaggggaatctgcgaatgaacaca 380
Query: 178 tgctccaaactgagttatctacttagcagaaaaacaaaagtgcctagtgcaactcagtaa 237
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tgctccaaactgagttatctacttagcagaaaaacaaaagtgcctagtgtaactcagtaa 440
Query: 238 ttgataagtacgatccgcagtggtagaggggagccgtcacttctcctggtggcatccacc 297
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 441 ttgataagtacgatccgcagtggtagaggggagccgtcacttctgatggt---atccacc 497
Query: 298 cctcaggcatcatacagaacacattgtagagacaatctgaaaactcagg----cccccac 353
|||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 498 cctcaggcatcatacagaacacattgtagagacaatctgaaaacccagggaagc----ac 553
Query: 354 agcctttctaccctctcttcctcagccatattagtgtctcagggctatgctgagctgaag 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agcctttctaccctctcttcctcagccatattagtgtctcagggctatgctgagctgaag 613
Query: 414 gcactctgtttaaagcaggcacctcagtttctggtgcacatttctgtgatccaaggaaat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gcactctgtttaaagcaggcacctcagtttctggtgcacatttctgtgatccaaggaaat 673
Query: 474 taaagcgccctaagagtggggcaaagcacgctctctttcagccctccctcctctcatcca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 taaagcgccctaagagtggggcaaagcacgctctctttcagccctccctcctctcatcca 733
Query: 534 gtaacactgcattggcttgtacagtactgattccagtctcattcgagattgatataaaac 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gtaacactgcattggcttgtacagtactgattccagtctcattcgagattgatataaaac 793
Query: 594 actggaaaagtagaatggatatctcaggggtgaggttgacattttcagtggtcacattgt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 actggaaaagtagaatggatatctcaggggtgaggttgacattttcagtggtcacattgt 853
Query: 654 cctggaatgtatttatgactct 675
||||||||||||||||||||||
Sbjct: 854 cctggaatgtatttatgactct 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
