BAC Information

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BAC

Clone NameMSMg01-333L17
Chromosome13 (Build37)
Map Location 21,265,078 - 21,379,863
singlet/doubletdoublet
Overlap geneTrim27, Gpx5
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
Downstream geneLOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333L17.T7 (MSMg01no333_l17.b1)MSMg01-333L17.TJ (MSMg01no333_l17.g1)
ACCAG449407AG449408
length758744
length of high quality
(start - end)		682 (72 - 753)671 (70 - 740)
definitionCHROMAT_FILE: MSMg01no333_l17.b1 PHD_FILE: MSMg01no333_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:58 2005CHROMAT_FILE: MSMg01no333_l17.g1 PHD_FILE: MSMg01no333_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(21,265,078 - 21,265,759)(21,379,193 - 21,379,863)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAGATCCGCGG
AATTCAGAAATCCTTACGATCCTTGCAAGCTCAGGTCTGGCTCAGAGCCA
TTCATCCGGGTCACGAAGGAACAAGTAGCTCCAGCTGTTCCGAGATGGTG
TGCACAAGCGCCCAGTTGGTGGAGCTTGCAGGGGTGGGAAGCTAAAGAGC
AGACTAGATTAGCAAGTAAATCTAGTTTATGAACACTGGCTGCAGTGCAA
ACCAGAGAGTGGCAGAAGCCTGAGCTATGAAAAGTAACTGCACAAGTACG
AAAAAGCTGCAAGATCAAGGATTAAAGACTAGAAACACTGGAAGGAAAAA
GTCAAGTGTGAGACGAGGAAATGTCAGTACAGAGCTCAGCTCAAATCCCA
GGTCCTTTGCTGCCACAGACTTGCAGACCTGACCATCTCCAGGCAAATGC
AGAGCTGCCCATTCTTGGAAATTGGTATCATAGTAAAACAAGACAGCTTT
CCGAAGAAAGGGTTGGGTATCAGTGTGACCCCAAAGAATCTCTAGGTTAT
ACAGCATCCAGAATCAGAGTTTTCATTTCTAATCTTAAATATGAACAAGA
ACCAGGGAAAGCAGGTATTTGTGAAAACATTTCTACAATAAAGAAAAAAG
TAAATACAGTAGGGGATTGGAAAGGACCTAAGAAAAGACAAATACAACAC
GAGAAGATGGAGATGATGTTATTGTTGTTGTTGTTGGAATCATCATCTCC
TCGAAGAA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCTGTGGCCCCAGCACTGGGAGGTAGAGTC
ATGAGTATCAGGAGTTCAAGGTCGTCTTCAGAGACACATTGACTTTGAGG
CCAGCATGGGCTATGTGAGATCCTATCTCACAAACAAACAATGACAAGGA
CAAGAAATGAAAGCTTGAAAGGCAATAAATACATCTTAAGCTATGTAATG
TGAATGGGATGGAGCCCTGGGGTGAAGGGCAGAAAGAAGGAATGTGCTTA
GGCTGTGAGATCAGAAAGTTCTTGGCATCTGGCATCACTATGAGGAGCAG
AGTTTGTGGGGTTTAGCAGGAACCACAGGAGGATGGGATGTATGGGTGTC
ACAGGGAGTGAATTGCCCGTGAATGAGGACACCCTGGGTCATCTAAGGAA
CAGAAATAATGTGTTTTCTCTTCTCTGCTTCTCTGCCGCAGCGTTCTTGT
CCTCACCCCTCAGAGACTGTGGTCATGAGCAAACATACCTTCTGGGAGCC
AATAAAAGTCCATGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGAC
CCGATGGCGTCCCTGTCATGCGCTGGTTCCACCAGGCTCCTGTCAGCACT
GTCAAGTCTGACATCATGGCGTACCTGAGCCATTTCAAAACCATATAGGA
AGGCCAAGCTTCTGACCTCTTCCTCCTTCCCCCTTAAAGACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_l17.b1 MSMg01no333_l17.b1 CHROMAT_FILE:
MSMg01no333_l17.b1 PHD_FILE: MSMg01no333_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:58 2005
         (682 letters)



>mm_chr13_21264878_21265959
          Length = 1082

 Score = 1272 bits (658), Expect = 0.0
 Identities = 676/682 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgcaagctcaggtctggctcagagccattcatccgggtcacgaaggaacaagtagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgcaagctcaggtctggctcagagccattcatccgggtcacgaaggaacaagtagctc 260

                                                                       
Query: 61  cagctgttccgagatggtgtgcacaagcgcccagttggtggagcttgcaggggtgggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctgttccgagatggtgtgcacaagcgcccagttggtggagcttgcaggggtgggaag 320

                                                                       
Query: 121 ctaaagagcagactagattagcaagtaaatctagtttatgaacactggctgcagtgcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaagagcagactagattagcaagtaaatctagtttatgaacactggctgcagtgcaaa 380

                                                                       
Query: 181 ccagagagtggcagaagcctgagctatgaaaagtaactgcacaagtacgaaaaagctgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagagagtggcagaagcctgagctatgaaaagtaactgcacaagtacgaaaaagctgca 440

                                                                       
Query: 241 agatcaaggattaaagactagaaacactggaaggaaaaagtcaagtgtgagacgaggaaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 agatcaaggattaaagactagaaacactggaaggaaaaagtcaagtgtaagacgaggaaa 500

                                                                       
Query: 301 tgtcagtacagagctcagctcaaatcccaggtcctttgctgccacagacttgcagacctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcagtacagagctcagctcaaatcccaggtcctttgctgccacagacttgcagacctg 560

                                                                       
Query: 361 accatctccaggcaaatgcagagctgcccattcttggaaattggtatcatagtaaaacaa 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accatcttcaggcaaatgcagagctgcccattcttggaaattggtatcatagtaaaacaa 620

                                                                       
Query: 421 gacagctttccgaagaaagggttgggtatcagtgtgaccccaaagaatctctaggttata 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 gacagctttccgaagaaagggttgggtatcagtgtgactccaaagaatctctaggttata 680

                                                                       
Query: 481 cagcatccagaatcagagttttcatttctaatcttaaatatgaacaagaaccagggaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcatccagaatcagagttttcatttctaatcttaaatatgaacaagaaccagggaaag 740

                                                                       
Query: 541 caggtatttgtgaaaacatttctacaataaagaaaaaagtaaatacagtaggggattgga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggtatttgtgaaaacatttctacaataaagaaaaaagtaaatacagtaggggattgga 800

                                                                       
Query: 601 aaggacctaagaaaagacaaatacaacacgagaagatggagatgatgttattgttgttgt 660
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 801 aaggacctaagaaaagacaaatacaacacgagaacttggagatgatgttattgttgttgt 860

                                 
Query: 661 tgttggaatcatcatctcctcg 682
           | ||||||||||||||||||||
Sbjct: 861 tcttggaatcatcatctcctcg 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no333_l17.g1 MSMg01no333_l17.g1 CHROMAT_FILE:
MSMg01no333_l17.g1 PHD_FILE: MSMg01no333_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:59 2005
         (671 letters)



>mm_chr13_21378871_21379941
          Length = 1071

 Score = 1243 bits (643), Expect = 0.0
 Identities = 664/671 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgtggccccagcactgggaggtagagtcatgagtatcaggagttcaaggtcgtcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 atctgtggccccagcactgggaggtagagtcatgagtatcaggagttcaaggtcgtcttc 934

                                                                       
Query: 61  agagacacattgactttgaggccagcatgggctatgtgagatcctatctcacaaacaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 agagacacattgactttgaggccagcatgggctatgtgagatcctatctcacaaacaaac 874

                                                                       
Query: 121 aatgacaaggacaagaaatgaaagcttgaaaggcaataaatacatcttaagctatgtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 aatgacaaggacaagaaatgaaagcttgaaaggcaataaatacatcttaagctatgtaat 814

                                                                       
Query: 181 gtgaatgggatggagccctggggtgaagggcagaaagaaggaatgtgcttaggctgtgag 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 813 gtgaatgggatggagccctggggtgaaggacagaaagaaggaatgtgcttaggctgtgag 754

                                                                       
Query: 241 atcagaaagttcttggcatctggcatcactatgaggagcagagtttgtggggtttagcag 300
           |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 753 atcagaaaattcttggcatctggcatcacgatgaggagcagggtttgtggggtttagcag 694

                                                                       
Query: 301 gaaccacaggaggatgggatgtatgggtgtcacagggagtgaattgcccgtgaatgagga 360
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 693 gaaccacaggaggatgggatgtatgggtgtcacagggagggaattgcctgtgaatgagga 634

                                                                       
Query: 361 caccctgggtcatctaaggaacagaaataatgtgttttctcttctctgcttctctgccgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 caccctgggtcatctaaggaacagaaataatgtgttttctcttctctgcttctctgccgc 574

                                                                       
Query: 421 agcgttcttgtcctcacccctcagagactgtggtcatgagcaaacataccttctgggagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 agcgttcttgtcctcacccctcagagactgtggtcatgagcaaacataccttctgggagc 514

                                                                       
Query: 481 caataaaagtccatgacatccgctggaactttgagaagttcctggtgggacccgatggcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 513 caataaaagtccatgacatccgctggaactttgagaagttcctggtgggacccgatggca 454

                                                                       
Query: 541 tccctgtcatgcgctggttccaccaggctcctgtcagcactgtcaagtctgacatcatgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tccctgtcatgcgctggttccaccaggctcctgtcagcactgtcaagtctgacatcatgg 394

                                                                       
Query: 601 cgtacctgagccatttcaaaaccatataggaaggccaagcttctgacctcttcctccttc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cgtacctgagccatttcaaaaccatataggaaggccaagcttctgacctcttcctccttc 334

                      
Query: 661 ccccttaaaga 671
           |||||||||||
Sbjct: 333 ccccttaaaga 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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