Query= MSMg01no333_m09.b1 MSMg01no333_m09.b1 CHROMAT_FILE:
MSMg01no333_m09.b1 PHD_FILE: MSMg01no333_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:01 2005
(344 letters)
>mm_chr13_56355361_56356104
Length = 744
Score = 561 bits (290), Expect = e-164
Identities = 339/368 (92%), Gaps = 26/368 (7%)
Strand = Plus / Plus
Query: 1 ttagaccaggcaatttaaagttcat----tcaaactgaacactgactctgagctggtgac 56
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 175 ttagaccaggcaatttaaagttcattccgtcaaactgaacactgactctgagctggtgac 234
Query: 57 attttaaaggtcacttgaatcatggtgacaagctggaagagccattcattggtcactggt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 attttaaaggtcacttgaatcatggtgacaagctggaagagccattcattggtcactggt 294
Query: 117 aaaagaggtggccaggaggtggtggatgtccagccagtctgctgagtggagctactgggc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaaagaggtggccaggaggtggtggatgtccagccagtctgctgagtggagctactgggc 354
Query: 177 tccatttgccaggtgtgtgtctgtggcttagcaagggaagcaggtccatg-tg------- 228
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 355 tccatttgccaggtgtgtgtctgtggcttagcaagggaagcaggtccatgctgccgaagc 414
Query: 229 ---gag----g---t--c--catgtggaggtgggtggcttgctctgggctggctgtctat 274
||| | | | ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 415 ttagagacttgcacttacttcatgtggaggttggtggcttgctctgggctggctgtctat 474
Query: 275 taagtctggggtgtagaaagttgggggtgactggctgagggaggccctgactcctaactc 334
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 475 taagtctggggtgtagaaagttgggggtgactggctaagggaggccctgactcctaactc 534
Query: 335 ttatatgg 342
|| |||||
Sbjct: 535 ttgtatgg 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_m09.g1 MSMg01no333_m09.g1 CHROMAT_FILE:
MSMg01no333_m09.g1 PHD_FILE: MSMg01no333_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:01 2005
(340 letters)
>mm_chr13_56535754_56536493
Length = 740
Score = 642 bits (332), Expect = 0.0
Identities = 338/340 (99%)
Strand = Plus / Minus
Query: 1 ctggtgttttcccttctccatggctccaatgtccactctcctccgacagtccagtctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctggtgttttcccttctccatggctccaatgtccactctcctccgacagtccagtctctg 481
Query: 61 gctgtgccatcactgcctgaacatggtagacctaggctctttgttccctctgacgtggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 480 gctgtgccatcactgcctgaacatggtagacctaggctctttgttccctctgatgtggtc 421
Query: 121 ctgggcgccatctccaatggctgctacagcagactgctgaagcgtgacctctgctctggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctgggcgccatctccaatggctgctacagcagactgctgaagcgtgacctctgctctggc 361
Query: 181 cacctctgtccagtgtcctctggggattctgtggccttgactgtactcgctaattcccta 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cacctctgtccagtgccctctggggattctgtggccttgactgtactcgctaattcccta 301
Query: 241 ttaaggcatgtgcaggtcagacagagtccagtggcttttcggctccttcctcctaccgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttaaggcatgtgcaggtcagacagagtccagtggcttttcggctccttcctcctaccgcc 241
Query: 301 tagtttgtccagttggagtccagccaggcagtgtggcctt 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tagtttgtccagttggagtccagccaggcagtgtggcctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
