Query= MSMg01no333_n23.b1 MSMg01no333_n23.b1 CHROMAT_FILE:
MSMg01no333_n23.b1 PHD_FILE: MSMg01no333_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:08 2005
(675 letters)
>mm_chr13_115836553_115837627
Length = 1075
Score = 719 bits (372), Expect = 0.0
Identities = 408/420 (97%)
Strand = Plus / Minus
Query: 1 ataagactgtagagcatggtgagacagcctgaaatcctagcacttggtgagacactaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ataagactgtagagcatggtgagacagcctgaaatcctagcacttggtgagacactaaga 712
Query: 61 tgggaagatcactagttcatggtcattctccatcatatgaggaattcaaggcctacatag 120
||||||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct: 711 tgggaaggtcactagttcatgatcattcgccatcatatgaggaattcaaggcccacatag 652
Query: 121 actacttgaaatatgctttcaaaccaacaaacagaaataaaacaaactaatactagagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 actacttgaaatatgctttcaaaccaacaaacagaaataaaacaaactaatactagagat 592
Query: 181 aaggcccagggctgtcctagggctgattggattcaaataaatgtctatccaacatcaact 240
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 591 aaggcccagggctgtcctagggctgattggaaccaaataaatgtctatccaacatcaact 532
Query: 241 tgactgaatcattacgttttgatggaactttagaaagaaaaagttaagatatcaaagtga 300
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgaccgaatcattaagttttgatggaactttagaaagaaaaagttaagatatcaaagtga 472
Query: 301 tgaaacatattccaaaatttcggcattggattcttggaaaatggggaaccattggtaggg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 471 tgaaacatattccaaaatttcggcattggattcttggaaaatggggaaccattgatagag 412
Query: 361 acgtatctgcatacatatttacagaaatgtaaaataaatcttcttagaaagttgatgggt 420
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atgtatttgcatacatatttacagaaatgtaaaataaatcttcttagaaagttgatgggt 352
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_n23.g1 MSMg01no333_n23.g1 CHROMAT_FILE:
MSMg01no333_n23.g1 PHD_FILE: MSMg01no333_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:08 2005
(664 letters)
>mm_chr13_115672627_115673690
Length = 1064
Score = 1210 bits (626), Expect = 0.0
Identities = 650/664 (97%), Gaps = 10/664 (1%)
Strand = Plus / Plus
Query: 1 cacgtgacttaaaacagtgatcatagagcattgaacttattaaaactgaatagagatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgtgacttaaaacagtgatcatagagcattgaacttattaaaactgaatagagatgca 260
Query: 61 tggaagtcatggaaaaacaaaagggatttgtgtgacccattttaactgttagtggcttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaagtcatggaaaaacaaaagggatttgtgtgacccattttaactgttagtggcttac 320
Query: 121 tcctagcagctgtgctcatatttcgtgatcagtgagcaagcctggttttcctcccataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctagcagctgtgctcatatttcgtgatcagtgagcaagcctggttttcctcccataaa 380
Query: 181 accagaacactttgccaatcaggaaaaagtcattgttgcttctggctagtacacacacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagaacactttgccaatcaggaaaaagtcattgttgcttctggctagtacacacacac 440
Query: 241 acacacacacacacacacacacacacgcacacgcacactcacaataacaatctttgatgc 300
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 acacacacacacacacacacaca----------cacactcacaataacaatctttgatgc 490
Query: 301 ccatgtctgcaccttcagttgttttatcaccacagaaaacagctcaccacgtgttagaga 360
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 491 ccatgtctgcaccttcagttgttttatcaccacagaaaacagctcatcaagtgttagaga 550
Query: 361 attgaggttctttttcagaagaattggaaaagagcatttaagaagctgaagttacaatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 attgaggttctttttcagaagaattggaaaagagcatttaagaagctgaagttacaatac 610
Query: 421 gccaattgctaatgccaaaacattcttgctttaagcccagaacttaagaaggttcagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gccaattgctaatgccaaaacattcttgctttaagcccagaacttaagaaggttcagaaa 670
Query: 481 tatgtgatgagcgccggtcttttccacataattcttcagaggagctcaagactctgacct 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tatgtgatgagcgccagtcttttccacataattcttcagaggagctcaagactctgacct 730
Query: 541 tttgaatgtttaaagaaagtctgatctctcctctcagatccctcccagggactactaatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tttgaatgtttaaagaaagtctgatctctcctctcagatccctcccagggactactaatt 790
Query: 601 ctcttatagattcttcttacatctagaattaagatcaaccaatttaaagtacagctatag 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 791 ctcttatagattcttcttacatctagaattaagatcaaacaatttaaagtacagctatag 850
Query: 661 tcca 664
||||
Sbjct: 851 tcca 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
