BAC Information

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BAC

Clone NameMSMg01-334N03
Chromosome13 (Build37)
Map Location 109,724,831 - 109,725,341
singlet/doubletsinglet
Overlap genePde4d
Upstream gene3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334N03.T7 (MSMg01no334_n03.b1)MSMg01-334N03.TJ (MSMg01no334_n03.g1)
ACCAG450222AG450223
length734735
length of high quality
(start - end)		526 (74 - 599)510 (74 - 583)
definitionCHROMAT_FILE: MSMg01no334_n03.b1 PHD_FILE: MSMg01no334_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:22 2005CHROMAT_FILE: MSMg01no334_n03.g1 PHD_FILE: MSMg01no334_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACGCGGA
ATTCTTCCTGCCTTACANAACAGGGACAAAAAAAGTAGAGCAGAGACTGA
AGGAAAGGCCATCCAGTGACCTGCCCACCTTGGGATCAATGCTATGGGCA
GGCACCAAACCCTGACACTCTTACTGATGCTATGTTGTGCTTGCAGACAA
GAACCTAGCCTAGCATCCCTGTCCTCAGAGAGGCTCTACCAGCAGCTGAC
TGAGACAGATGCAGATTCTTACAGCCAACCATTAGTCTAAAGTCAGGGAC
CCCCATGAAAGAGTTAGGGGAAGGACTAAAGGAACTGAAGGGGATGGCGA
CCCCACAGAAAGCACAACAGTGTCAACAAACCCGGGTCCCTCAGAGCTCC
CAGAGACTAAGACACTAGCCAAAGAGCATAAATGGTCTGGTCTGTGGCCC
CCAGCACATAGGTAACACCTTGTCTGGCCTCAGTGGGAGAAGATATACCT
AGTCCTCTAGAGACTTGATGCTCCACGGAAGGAAAATAGGGAAAGTTGGG
GGTGAGTAAGTGACTGTGTGGGAGTGCATGGAAGAATACCCTCTCAGAGG
CAAAGGGGATGGGAGATAGGCTGAAGAGCTCTGGGTAGAGTGACCAGGAG
AAAGGGACAGCTGTTGAAATGTAAATTTATAAAATATATACTTAAATGTA
TATGTATTTATATTTACATCAATATAAATATTAA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACACTGGGTGGAAATTGAGTCTTAGA
GACCTCAAAGAAAACCCCACAGTGACACACTTCCTCCAACAAGGCCACAA
CTCCTAATGGTGCTCCTTGGACCAAACCCATGAGTCTATGGGAGCCAAAC
CTTCAAACCACAACACCTGTATTACAATTCTTGTCCTAATTAGTTAAATG
CAAAAGCTAATGTCTACAGCATTTTCTCTAAATAGAACATTGAAGAAAAA
CACACATGTACAGTCATAACACATAAGTAATAAATACTTGTCTTTAGAAG
TCTGTAATTCTTTAGAAATTTTTTCAAATAAAAAGTATTTCTAGGCAGGA
TATTTAATAAATATATGCTATGTTTTGTTTCCTGGGTTGATGCCCAGTCT
AATATTCTGGGGATTATTGTGTTCAGTGCTTATATTAATATTGTTTCGTC
ATTTAAAAATAAACATGTGTCAGGAGTACTTCTTCCTTTAAAACTATGGC
AGTGGTGTTGCATGCCTTTTATCCCAGCACTTGGGAGGCAGAGGGTGGCA
GATCTCTGAGTTCGAGGCCAGCCTGGTCTAGAGTGAGTTCCAGGACAGCC
AAGGCTACACAGCGAAACCATGTCTCAACAAAACAAAACAAAACAAAACA
AAACATAACCAAACATAACCAAATAAAACCTACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_n03.g1 MSMg01no334_n03.g1 CHROMAT_FILE:
MSMg01no334_n03.g1 PHD_FILE: MSMg01no334_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:22 2005
         (510 letters)



>mm_chr13_109724631_109725541
          Length = 911

 Score =  942 bits (487), Expect = 0.0
 Identities = 505/511 (98%), Gaps = 1/511 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacactgggtggaaattgagtcttagagacctcaaagaaaaccccacagtgacacacttc 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 cacactgggtggaaattgagtcttggagacctcaaagaaaaccccacagtgacacacttc 260

                                                                       
Query: 61  ctccaacaaggccacaactcctaatggtgctccttggaccaaacccatgagtctatggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccaacaaggccacaactcctaatggtgctccttggaccaaacccatgagtctatggga 320

                                                                       
Query: 121 gccaaaccttcaaaccacaacacctgtattacaattcttgtcctaattagttaaatgcaa 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaaaccttcaaaccacaacatctgtattacaattcttgtcctaattagttaaatgcaa 380

                                                                       
Query: 181 aagctaatgtctacagcattttctctaaatagaacattgaagaaaaacacacatgtacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 aagctaatgtctacagcattttctctaaatagaacattgaagaaaaacacacatgtacat 440

                                                                       
Query: 241 tcataacacataagtaataaatacttgtctttagaagtctgtaattctttagaaattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 441 tcataacacataagtaataaatacttgtctttagaagtctgtaattctttagaaatgctt 500

                                                                       
Query: 301 tcaaataaaaagtatttctaggcaggatatttaataaatatatgctatgttttgtttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaataaaaagtatttctaggcaggatatttaataaatatatgctatgttttgtttcct 560

                                                                       
Query: 361 gggttgatgcccagtctaatattctggggattattgtgttcagtgcttatattaatattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggttgatgcccagtctaatattctggggattattgtgttcagtgcttatattaatattg 620

                                                                       
Query: 421 tttc-gtcatttaaaaataaacatgtgtcaggagtacttcttcctttaaaactatggcag 479
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttctgtcatttaaaaataaacatgtgtcaggagtacttcttcctttaaaactatggcag 680

                                          
Query: 480 tggtgttgcatgccttttatcccagcacttg 510
           |||||||||||||||||||||||||||||||
Sbjct: 681 tggtgttgcatgccttttatcccagcacttg 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space:   450500
Effective search space used:   450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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