BAC Information

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BAC

Clone NameMSMg01-335A07
Chromosome13 (Build37)
Map Location 107,841,420 - 108,006,444
singlet/doubletdoublet
Overlap geneLOC100040322
Upstream geneOlfr717-ps1, LOC631097, EG620949, Ipo11, Dimt1, Kif2a
Downstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335A07.T7 (MSMg01no335_a07.b1)MSMg01-335A07.TJ (MSMg01no335_a07.g1)
ACCAG450373AG450374
length706730
length of high quality
(start - end)		646 (61 - 706)595 (80 - 674)
definitionCHROMAT_FILE: MSMg01no335_a07.b1 PHD_FILE: MSMg01no335_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:38 2005CHROMAT_FILE: MSMg01no335_a07.g1 PHD_FILE: MSMg01no335_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,841,420 - 107,842,065)(108,005,878 - 108,006,444)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGGATCCGCGGAATTCTCATA
CCTTTTCCATGCAGTCTTAGAGCCCACTTAAACTGAAGGAAGCTGTTTTT
CAGTATATCCTAGGGGACTAGTTTAGGTATTAGAGGATGTTGGTCAGACC
TTCGAAGAAGCAAGTGACAATATTTCTGAAAGTAAAAACAACGAGGCTAG
GAAGTATTACTAGTAACTGTGCTCTGCCTAAGCCTTCACAGATGTTTGCC
TTCATTGGTTGCTGCTATTTTGGGAGTTCAAGCTATCAGCAGGAAGCAGG
AGTGGGATTCTTGACTCTCAAATTTAGCAGAATATGTACACTGGAAGAAG
CTTATGTACAAGGAAAATAGGATTAGAAAATACCAGCTGTCACAAAATAA
TCAACATGCTTAACTAAAGATATTTCACCACTTTAAAATAACCTGAAACT
TTATTTTAATATTAGAACAAAAATGCACTTTAAGCATCTTTTGTCATTGG
ATTTCGAAGACACAAAAGGCCGTCTTCAGGACTGGACATAAACCTTGTGT
GTTAGGACGGGCACTTTTAACATTACTATGCCAAGGAACTTGCCTACTAG
CCAAGTTTTTAAAGAAAGAAAACAACTATACTCCTCTTCCACTTACTGCT
AAGGACACTGATTATCGTTAAAGACACAGTGTATGTTTTCAATAGTTTAT
GTCACC

NCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGTACCTGGAGAGCGGGG
TATTTCTGCTCCAATCCCTAATTTTTCTTCGAAGCCTTCTGAGAAGTAAC
CATTCACAGATAGCGGTTTAGAGCCAGCTTGGTGTTTCTTTTAGTACAAG
GATTTTTTTTTCTCTCCTATAGTTTTCATTCTAACTTTGCTAAGAGCGGT
TTGCTGGTATGACACGTTTGGCTCTAGAAAGCAGAATTAGCTGCTAAGAG
GCTTTCCTCCCCACAGGGCTTTTCTAGGTGACTTCCAACCTCAGACTGAA
GCAGCACAGGCATCTACTCCACGGTAAAAGATTTCAGGACACGTAAAATT
TCAATCCCGCCTTTATTAAAACGAGCCCTTAGTAGGACCAAAACTCTTGA
GAGAGTGGTAACGGGATTTCAGGCCAGTGATCCCTAGCACTGCTGGGGAG
GCCAAGGTAGGAAAACTGTCATTTCAAAGCTAGCCTGGGCTACATTTTTG
AGACTCTGTTTAGGATGGAAAAGTACCACTCATAAGGCTTTCTACTCTCT
TGACAATGACAATGACACTTTACAGTTTCATTCCCATGACCTTACACCTG
GTCCCAGGTAAAACACAAGAAAATGCAGGGACCAGGGACCACTGACTTCT
CACTCAATCCACTCTTCCCTTCCTTCAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_a07.b1 MSMg01no335_a07.b1 CHROMAT_FILE:
MSMg01no335_a07.b1 PHD_FILE: MSMg01no335_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:38 2005
         (646 letters)



>mm_chr13_107841220_107842265
          Length = 1046

 Score = 1241 bits (642), Expect = 0.0
 Identities = 645/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagtcttagagcccacttaaactgaaggaagctgtttttcagtatatcctaggggacta 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagtcttagcgcccacttaaactgaaggaagctgtttttcagtatatcctaggggacta 260

                                                                       
Query: 61  gtttaggtattagaggatgttggtcagaccttcgaagaagcaagtgacaatatttctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttaggtattagaggatgttggtcagaccttcgaagaagcaagtgacaatatttctgaa 320

                                                                       
Query: 121 agtaaaaacaacgaggctaggaagtattactagtaactgtgctctgcctaagccttcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaaaaacaacgaggctaggaagtattactagtaactgtgctctgcctaagccttcaca 380

                                                                       
Query: 181 gatgtttgccttcattggttgctgctattttgggagttcaagctatcagcaggaagcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgtttgccttcattggttgctgctattttgggagttcaagctatcagcaggaagcagg 440

                                                                       
Query: 241 agtgggattcttgactctcaaatttagcagaatatgtacactggaagaagcttatgtaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgggattcttgactctcaaatttagcagaatatgtacactggaagaagcttatgtaca 500

                                                                       
Query: 301 aggaaaataggattagaaaataccagctgtcacaaaataatcaacatgcttaactaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaaaataggattagaaaataccagctgtcacaaaataatcaacatgcttaactaaaga 560

                                                                       
Query: 361 tatttcaccactttaaaataacctgaaactttattttaatattagaacaaaaatgcactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttcaccactttaaaataacctgaaactttattttaatattagaacaaaaatgcactt 620

                                                                       
Query: 421 taagcatcttttgtcattggatttcgaagacacaaaaggccgtcttcaggactggacata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagcatcttttgtcattggatttcgaagacacaaaaggccgtcttcaggactggacata 680

                                                                       
Query: 481 aaccttgtgtgttaggacgggcacttttaacattactatgccaaggaacttgcctactag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaccttgtgtgttaggacgggcacttttaacattactatgccaaggaacttgcctactag 740

                                                                       
Query: 541 ccaagtttttaaagaaagaaaacaactatactcctcttccacttactgctaaggacactg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaagtttttaaagaaagaaaacaactatactcctcttccacttactgctaaggacactg 800

                                                         
Query: 601 attatcgttaaagacacagtgtatgttttcaatagtttatgtcacc 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attatcgttaaagacacagtgtatgttttcaatagtttatgtcacc 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no335_a07.g1 MSMg01no335_a07.g1 CHROMAT_FILE:
MSMg01no335_a07.g1 PHD_FILE: MSMg01no335_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:38 2005
         (595 letters)



>mm_chr13_108005876_108006872
          Length = 997

 Score = 1023 bits (529), Expect = 0.0
 Identities = 557/567 (98%), Gaps = 2/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggtacctggagagcggggtatttctgctccaatccctaatttttcttcgaagccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agaggtacctggagagcggggtatttctgctccaatccctaatttttcttcgaagccttc 510

                                                                       
Query: 61  tgagaagtaaccattcacagatagcggtttagagccagcttggtgtttcttttagtacaa 120
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| 
Sbjct: 509 tgagaagtaaccattcacggagagcggtttagagccagcttggtgtttcttttagtacag 450

                                                                       
Query: 121 ggatttttttt--tctctcctatagttttcattctaactttgctaagagcggtttgctgg 178
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggatttttttttctctctcctatagttttcattctaactttgctaagagcggtttgctgg 390

                                                                       
Query: 179 tatgacacgtttggctctagaaagcagaattagctgctaagaggctttcctccccacagg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tatgacacgtttggctctagaaagcagaattagctgctaagaggctttcctccccacagg 330

                                                                       
Query: 239 gcttttctaggtgacttccaacctcagactgaagcagcacaggcatctactccacggtaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gcttttctaggtgacttccaacctcagactgaagcagcacaggcatctactccacggtaa 270

                                                                       
Query: 299 aagatttcaggacacgtaaaatttcaatcccgcctttattaaaacgagcccttagtagga 358
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aagatttcaggacacataaaatttcaatcccgcctttattaaaacgagcccttagtagga 210

                                                                       
Query: 359 ccaaaactcttgagagagtggtaacgggatttcaggccagtgatccctagcactgctggg 418
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ccaaaactcctgagagagtggtaacgggatttcaggccagtgatccctagcactgctggg 150

                                                                       
Query: 419 gaggccaaggtaggaaaactgtcatttcaaagctagcctgggctacatttttgagactct 478
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 149 gaggccaaggtaggaaaactgtcatttcaaagctagcctgcgctacatttttgagactct 90

                                                                       
Query: 479 gtttaggatggaaaagtaccactcataaggctttctactctcttgacaatgacaatgaca 538
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 89  gtttaggatggaaaagtacctctcataaggctttttactctcttgacaatgacaatgaca 30

                                      
Query: 539 ctttacagtttcattcccatgacctta 565
           |||||||||||||||||||||||||||
Sbjct: 29  ctttacagtttcattcccatgacctta 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 997
Length adjustment: 10
Effective length of query: 585
Effective length of database: 987
Effective search space:   577395
Effective search space used:   577395
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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