Query= MSMg01no335_b02.b1 MSMg01no335_b02.b1 CHROMAT_FILE:
MSMg01no335_b02.b1 PHD_FILE: MSMg01no335_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:42 2005
(414 letters)
>mm_chr13_117104356_117105169
Length = 814
Score = 702 bits (363), Expect = 0.0
Identities = 390/399 (97%)
Strand = Plus / Plus
Query: 13 ggaattcatcaattcccgctgatggtcctttcacaaagcccggaccatttttcctcttct 72
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggaattcatcaaatccagctgatggtcctttcacaaagcccggaccatttttcctcttct 272
Query: 73 gcagtctgtctaagcctcagctctgaatttagagtctctgagttgttttaccttagcctc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gcagtctgtctaagcctcagctctgaatttagagtctctgagttgttttaccttagcctc 332
Query: 133 gggaggtttaccgcgagaaaaagcgggggaggggggtggggtgggatacctcagaggtca 192
||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 333 gggaggtttacagcgagaaggagcgggggagggggttggggtgggatacctcagaggtca 392
Query: 193 aagaggtgggggaggagtcaaaaattatgggcctgggctggagagggagttgtcaagctg 252
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 393 aagaggtgggggaggagtcgaaaattacgggcctgggctggagagggagttgtcaagctg 452
Query: 253 ggaaactaccagggttgagtaaaggcaatcttcccttaggtttctatatcagtgtgggca 312
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 453 ggaaactaccagggttgagtaaaggcaaccttcccttaggtttctatatcagtgtgggca 512
Query: 313 agacggcctcctagggctggggttggctgccaaggtgatgtcaagagttactccttggtc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agacggcctcctagggctggggttggctgccaaggtgatgtcaagagttactccttggtc 572
Query: 373 ctttgaattaagctgtctgtcggctaaagcatgttgtgg 411
|||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctttgaattaagctgtctgtcggctaaagcatgttgtgg 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space: 326025
Effective search space used: 326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_b02.g1 MSMg01no335_b02.g1 CHROMAT_FILE:
MSMg01no335_b02.g1 PHD_FILE: MSMg01no335_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:42 2005
(546 letters)
>mm_chr13_117251675_117252617
Length = 943
Score = 1017 bits (526), Expect = 0.0
Identities = 540/546 (98%), Gaps = 3/546 (0%)
Strand = Plus / Minus
Query: 1 attcagtctccaactgaatatgaagtgaacaagaaaaataatgatttaattttattttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 attcagtctccaactgaatatgaagtgaacaagaaaaataatgatttaattttattttta 753
Query: 61 attaaaattgttttaggtgatttacctctaggagatggtctttaactacctataatacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 attaaaattgttttaggtgatttacctctaggagatggtctttaactacctataatacat 693
Query: 121 acacagtcatcttcttctttttttttttctaaaccagatgatgtctaatactatctcagg 180
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 acacagtcatcttcctc---ttttttttctaaaccagatgatgtctaatactatctcagg 636
Query: 181 atttctcaaaagcagttacaattacatgagcttcaagctacatctcattgtcttgcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atttctcaaaagcagttacaattacatgagcttcaagctacatctcattgtcttgcttct 576
Query: 241 ataccttactaaaaaaacgttcccaagggctttcttcagtggtatgagcactgggcaagc 300
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 575 agaccttactaaaaaaacgttcccaagtgctttcttcagtggtatgagcactgggcaagc 516
Query: 301 agccagcggtgttagttcatggaggccaggtagctgtcagtggggctgtggcagcatgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agccagcggtgttagttcatggaggccaggtagctgtcagtggggctgtggcagcatgtc 456
Query: 361 taattttgctgtattaaacctgtcacaaaatgttaagtaagagattacgggaagtatgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 taattttgctgtattaaacctgtcacaaaatgttaagtaagagattacgggaagtatgca 396
Query: 421 tagaacgcatgctttataacttaataaacgtgtagtgctgggaacaagctaaagccttcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tagaacgcatgctttataacttaataaacgtgtagtgctgggaacaagctaaagccttcc 336
Query: 481 tcttttatcttctcgtctatttggcttcacccagctttttaagccactgctaaaagaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tcttttatcttctcgtctatttggcttcacccagctttttaagccactgctaaaagaatg 276
Query: 541 agtgaa 546
||||||
Sbjct: 275 agtgaa 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 943
Length adjustment: 10
Effective length of query: 536
Effective length of database: 933
Effective search space: 500088
Effective search space used: 500088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
