Query= MSMg01no335_d16.b1 MSMg01no335_d16.b1 CHROMAT_FILE:
MSMg01no335_d16.b1 PHD_FILE: MSMg01no335_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:55 2005
(401 letters)
>mm_chr13_21233933_21234733
Length = 801
Score = 745 bits (385), Expect = 0.0
Identities = 397/401 (99%)
Strand = Plus / Plus
Query: 1 gttctgtggtttcatatacatgtaaatgagtgttccgtaaaacagtgttactactgtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gttctgtggtttcatatacatgtaaatgagtgttccgtaaaacagtgttacaactgtgag 260
Query: 61 gtgggagccacatgtattgaggacctttctccaccttgtcgctgacttgatcttcatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgggagccacatgtattgaggacctttctccaccttgtcgctgacttgatcttcatcac 320
Query: 121 agcttgagtgatagctgcataggagatgaggattatagatagaggtactagaagaaatat 180
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 agcttgagtgataactgcataggagatgaggattagagatagaggtactagaagaaatat 380
Query: 181 gactccaagagtaaacacaacgatctcaatcactctggagtaaacacaagccatcttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactccaagagtaaacacaacgatctcaatcactctggagtaaacacaagccatcttgat 440
Query: 241 caatgcaggcatttcgcagaaaaaattatccacttcccggtgcccacaccttggcaactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatgcaggcatttcgcagaaaaaattatccacttcccggtgcccacaccttggcaactt 500
Query: 301 caaagtcaaggaacaaagaattaacgcactgccgagaccacccaaccaggctgacagcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 caaagtcaaggaacaaagaattaacgcactgccgagaccacccaaccaggccgacagcac 560
Query: 361 catcttctggcaaagcacagggtgcattattactgtgtagt 401
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcttctggcaaagcacagggtgcattattactgtgtagt 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_d16.g1 MSMg01no335_d16.g1 CHROMAT_FILE:
MSMg01no335_d16.g1 PHD_FILE: MSMg01no335_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:55 2005
(471 letters)
>mm_chr13_21404079_21404948
Length = 870
Score = 818 bits (423), Expect = 0.0
Identities = 466/493 (94%), Gaps = 23/493 (4%)
Strand = Plus / Minus
Query: 1 agtctctgtgtcttagtagccactaaaaaaaaagtagtcctcttcccctaa------ccc 54
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 751 agtctctgtgtcttagtagccactaaaaaaaaagtagtcctcttcccctaagccccgccc 692
Query: 55 ct------cct----------ccccccgagtccttggatcccagtccagtgcccacttct 98
|| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cttccccccctccccccccccccccccgagtccttggatcccagtccagtgcccacttct 632
Query: 99 ctactcattccttctgggtttggttcaactggttcagcctccctcccaactcactttgct 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ctactcattccttctgggtttggttcaactggttcagcctccctcccaactcactttgct 572
Query: 159 atttaaaccactgtttcctagaacctatggggctgctccaagttacagatcagcatggaa 218
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 attt-aaccactgtttcctagaacctatggggctgctccaagttacagatcagcatggaa 513
Query: 219 tagggcaggtagtggctggtcagatggccatcaaggaggactggcaaaagcagatgggga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 512 tagggcaggtagtggctggtcagatggccatcaagggggactggcaaaagcagatgggga 453
Query: 279 cttgttcaaagatctactaggtgctgagaagcagagaagatgcagggaaaacacaataga 338
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 452 cttgttcaaagatctactaggtgctgagaagcagagaaaatgcagggaaaacacaataga 393
Query: 339 gcacaatgcatggaggtaggagagctgccgtagcatcagaggcagaagtctgcaaaggaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gcacaatgcatggaggtaggagagctgccgtagcatcagaggcagaagtctgcaaaggaa 333
Query: 399 ggcctctctcccttcaagaacaggagagatccctgaaagtgcttgaaatcagtttaagtc 458
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 332 ggcctctctcccttcaagaacaggagagatccctgaaagtgtttgaaatcagtttaggtc 273
Query: 459 cactggtgggggt 471
|||||||||||||
Sbjct: 272 cactggtgggggt 260
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 870
Length adjustment: 10
Effective length of query: 461
Effective length of database: 860
Effective search space: 396460
Effective search space used: 396460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
