BAC Information

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BAC

Clone NameMSMg01-335J03
Chromosome13 (Build37)
Map Location 17,755,389 - 17,755,508
singlet/doubletsinglet
Overlap gene5033411D12Rik
Upstream genenone
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335J03.T7 (MSMg01no335_j03.b1)MSMg01-335J03.TJ (MSMg01no335_j03.g1)
ACCAG450795AG450796
length740760
length of high quality
(start - end)
---121 (77 - 197)
definitionCHROMAT_FILE: MSMg01no335_j03.b1 PHD_FILE: MSMg01no335_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:22 2005CHROMAT_FILE: MSMg01no335_j03.g1 PHD_FILE: MSMg01no335_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTTTGTCTTNTTTNNNNNNNNNNNNNNNNNNTTCTTTATXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTCGAGGATCCGCGGAATTCTCAAATAGC
TAACAAAAATTAAATCTACCATATGACCAGTGATACCTCTCTTTGGCATT
TTCCCAGAANCATGAATATTCTGCTGCAAATATTCCTGCTCAGNCATTGT
CATTGNCATTCTATTNCATATAGCAGGNACATGGGGAACAACTAAAAATT
TTTCAACTGGNGCTCTTGAAAGGCCATGGAAAATGTTGTCCCTAACTACT
ATGGAAAANGAATTCCCCTGCAAAAAAAAATTAAAAACCTGGAATTTTTC
AAAATAAGGGTTGGAAATTAAAAAAAATCTGTCTAATGGGGGGTACCCCC
ACCCCCAAAAAAGGCAAGTCCTTTTTGACATCTATTTAAGGNCCNNTTGG
GGCCAANTTAGAATGACCAAGNNNNNNNNNACAANNNNACGGCGAAATAA
ACCGCACCTTTTTTTTTTATTTTGGGGGTTATCGCGNNNNNNNNTTANNC
TNNNNNNNNNNNNNNNNCGGCTGGGGGCTGGGGGGGGGGGGGAGAGGCTG
GGGGGGGGTTTNAAAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNANANNAAAAAAAGAGTGGNNNNTNNNNNNNNNNNNNNG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAGCACCCCACCTCCCACAGTCC
AGGTTCGTTAAAGTTCTAGCTTTCTTTTTGCAATCCTATTCCTCTTGGTT
CTTTTTTTTTTTAGGGGTCTGAGGGAAGGAGGGACACACACACACACCCA
CCCTCGAATACATTTTCTGGACATCATACCTGATATCGAGTTAACATTTG
TATTTGATNTGATCTCTGGATTCTGGGTCNCTACCTAGTAGGAGTGAAAA
AAAAGGGCAGACTGCTACACCCACCTGGATNTNTATATTTTTTGCTATCA
TGGTGGGTGNNGAATNTTGAACTACGGTAAAAAACCACCAAACATATTAC
TTACTGATGGGNCATTTCCCCAGCCTCTGTTTGGCTTATTAGATTTTTAT
TACCGAAATATAANNNAGATTATTAAGTAATAATTGGAGGCCCCACCCTT
GGGGAAAAATAAAAAAACCCCACTTTATATCCGGGATTACTCNNNNNNNC
NCCCCCCTTTGGTTCTTTTTTGGTTTTTTTTCCCCTTCCGGGGGCCGNAA
TTATTCAGGAACGGAGATATTTGGTTTGGCNTAGACGGGACCCTTTTTAT
TTTTNNNCCCGGGGGTNTTTTNANAGGAGGACNNGNNNAAAAAATTCTTT
TGGGGTTTTTGAACCTTCAAAAATGTGAATTTTATGGGAGAGTACAATGG
GGGGGTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_j03.g1 MSMg01no335_j03.g1 CHROMAT_FILE:
MSMg01no335_j03.g1 PHD_FILE: MSMg01no335_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:23 2005
         (121 letters)



>mm_chr13_17755189_17755708
          Length = 520

 Score =  211 bits (109), Expect = 1e-59
 Identities = 118/121 (97%), Gaps = 1/121 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagcaccccacctcccacagtccaggttcgttaaagttctagctttctttttgcaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgagcaccccacctcccacagtccaggttcgttaaagttctagctttctttttgcaatcc 261

                                                                       
Query: 61  tattcctcttggttctttttttttttaggggtctgagggaaggagggacacacacacaca 120
           ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 260 tattcctcttgtttttttttttttttaggg-tctgagggaaggagggacacacacacaca 202

            
Query: 121 c 121
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 520
Length adjustment: 8
Effective length of query: 113
Effective length of database: 512
Effective search space:    57856
Effective search space used:    57856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)