BAC Information

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BAC

Clone NameMSMg01-335L12
Chromosome13 (Build37)
Map Location 5,317,251 - 5,317,654
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335L12.T7 (MSMg01no335_l12.b1)MSMg01-335L12.TJ (MSMg01no335_l12.g1)
ACCAG450909AG450910
length731732
length of high quality
(start - end)
538 (114 - 651)404 (199 - 602)
definitionCHROMAT_FILE: MSMg01no335_l12.b1 PHD_FILE: MSMg01no335_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:34 2005CHROMAT_FILE: MSMg01no335_l12.g1 PHD_FILE: MSMg01no335_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXGTGCAGAGAATCCGCGGAATTCTCAACA
TATTACTCTCTAATAGCCGAGAAGCAAATAAAGAAATGTTCAATGTCCTT
AGTTATCAGGGAAATGCATTACAATCACTAAACTCCACTCAAATTCCCCT
GGCAGCAGTGCATTCTTTGCTACCTGCCCCAGTGTTCTGAATGAAAGACA
CACGCATGAAGCTTTAAATTTTTTTTTTATTTTAGGATTTTTTTATTAGA
TATTTTCTTTATATACATTTCAAATGCTATCCCGAATGTTCCCTATACCC
TCCCTCCGCCCTGCTCCCCTACCCACCTACTCCTGCTTCTTGGCCCTGGC
ATTCCCCTGTACTGGGGCATGTAAAGTTTGCAATACCAAGGGGCCTCTCT
TCCCAGTCGTGGCCGACTAGACGATCTTCTGCTACATATGCAGCTAGAGA
TACAATCTAATCCTAAATCTGATCGTGGACTAATATCCAATATATACAAA
GAGCTCAAGAAGCTGGACTCCAGAAATTCAAATAACCCCATTAAAAATTG
GGGTTCAGAGGTAAACAAAGAAATCTCAACTGAGGAATACCGCATGGCTG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
AACAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAATAAAAAATTCAGGTGACTGCAGATGCTG
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTTCTAGGTTTTTCCTCTGGTTCCTTCATGGAACTTC
GGTTGGGGGCTGGGGGGAGCTCGCATGCACTGAACCTAGGAAAAGCTTTC
AGGGGTTCCCCTCGAGGGAAGACTTTTATTTCTTGGTATATGTAGTCATA
TACACTGGGGCTACAGCAGCTCTGGGCAAAATCCCCCTACTGCTATACTC
ATAGACCAGAGAAACTTCCAAAAGACATTGTATTGAATTATCAAAGAAGA
AAAATAAGCAGGTCTTCCCTTGACATAACTGTTGCTTGGTCTTTCTGTTA
CATTTTATGAGATTTGGCGTTTTTAAGAAAATGGAGAAATCTTTTGTAAG
CAAGGGAGGGGTGTGTGAGTTGGAGTGCTTGCCAACATCACCTCCTAGTC
TCCATTAAGTACTCCGAATGTTGGGGGCATTCCAAGGGGCCCATCTCCTT
TATACAAACTTTGTTTATCATAGGGCTTCCTCTGTGAAAGAATTATGTTT
TGTTCTCTGTGCTATTCGAATAAAAAGTGCTGGCTTCACCATTCAGCTGT
TTCACACAATTTAATAAAAACAACATCAACAATTCCCACCAACAATAAAA
TGAAATGGGAAAATCTTTTGGAAGATCTGAGAATAAGAGTTTAACCCAAG
TGGTATGTCCTTTGAACATTAAATTATTAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_l12.g1 MSMg01no335_l12.g1 CHROMAT_FILE:
MSMg01no335_l12.g1 PHD_FILE: MSMg01no335_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:34 2005
         (404 letters)



>mm_chr13_5317051_5317854
          Length = 804

 Score =  758 bits (392), Expect = 0.0
 Identities = 401/404 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacactggggctacagcagctctgggcaaaatccccctactgctatactcatagacca 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 604 tatacactggggctacagcagctctgggcaaaatccctctactgctatactcatagacca 545

                                                                       
Query: 61  gagaaacttccaaaagacattgtattgaattatcaaagaagaaaaataagcaggtcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gagaaacttccaaaagacattgtattgaattatcaaagaagaaaaataagcaggtcttcc 485

                                                                       
Query: 121 cttgacataactgttgcttggtctttctgttacattttatgagatttggcgtttttaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 484 cttgacataactgttgcttggtctttctgttacattttatgagatttggtgtttttaaga 425

                                                                       
Query: 181 aaatggagaaatcttttgtaagcaagggaggggtgtgtgagttggagtgcttgccaacat 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 424 aaatggagaaatcttttgtaagcaagagaggggtgtgtgagttggagtgcttgccaacat 365

                                                                       
Query: 241 cacctcctagtctccattaagtactccgaatgttgggggcattccaaggggcccatctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cacctcctagtctccattaagtactccgaatgttgggggcattccaaggggcccatctcc 305

                                                                       
Query: 301 tttatacaaactttgtttatcatagggcttcctctgtgaaagaattatgttttgttctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tttatacaaactttgtttatcatagggcttcctctgtgaaagaattatgttttgttctct 245

                                                       
Query: 361 gtgctattcgaataaaaagtgctggcttcaccattcagctgttt 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtgctattcgaataaaaagtgctggcttcaccattcagctgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)