Query= MSMg01no335_n19.b1 MSMg01no335_n19.b1 CHROMAT_FILE:
MSMg01no335_n19.b1 PHD_FILE: MSMg01no335_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:46 2005
(543 letters)
>mm_chr13_63005983_63006925
Length = 943
Score = 930 bits (481), Expect = 0.0
Identities = 517/539 (95%), Gaps = 17/539 (3%)
Strand = Plus / Plus
Query: 6 gaattctttcctcagttctcgggctcttaggtgtctgatctctctcccttgtaaaacatt 65
||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 221 gaattctttcctcagttcttggg----------------ctctctcccttgtaaaacata 264
Query: 66 ccattaaaaagcagcacaccaatatcaccacacctgaggtgctggacaggagaattcctg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccattaaaaagcagcacaccaatatcaccacacctgaggtgctggacaggagaattcctg 324
Query: 126 gagctcaatgatcagccagtctagccaatctggtgagctccaagttcagtgagaaaccct 185
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 gagctcaatggtcagccagtctagccaatctgatgagctccaagttcagtgagaaaccct 384
Query: 186 tgctcaaatt-aaaaaaaaaaaatgttgggggtgattaaggtatgcagacaactgagact 244
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 tgctcaaattaaaaaaaaaaaaatgttgggggtgattaaggcatgcagacaactgagact 444
Query: 245 gttctccacaggcatgcacacatgggcacatgtgaacacaccaaacgttattttctagtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttctccacaggcatgcacacatgggcacatgtgaacacaccaaacgttattttctagtg 504
Query: 305 ttctagaaatgccacatttgcttttctttctagaggaagcttgcagtcaaccaacctccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctagaaatgccacatttgcttttctttctagaggaagcttgcagtcaaccaacctccc 564
Query: 365 aagagaggccccataacgctgatctcctcaaccctggccacgattaattggatcacagac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagagaggccccataacgctgatctcctcaaccctggccacgattaattggatcacagac 624
Query: 425 ccagccaaagccagttgtgagctcaggcaagcatgctaagctgtacagcagtgccgagtg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagccaaagccagttgtgagctcaggcaagcatgctaagctgtacagcagtgccgagtg 684
Query: 485 gtacagcagtaagtgtgccaggtggtccctggattcattgtgggaatctgaaatagcta 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtacagcagtaagtgtgccaggtggtccctggattcattgtgggaatctgaaatagcta 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_n19.g1 MSMg01no335_n19.g1 CHROMAT_FILE:
MSMg01no335_n19.g1 PHD_FILE: MSMg01no335_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:46 2005
(532 letters)
>mm_chr13_63131817_63132748
Length = 932
Score = 967 bits (500), Expect = 0.0
Identities = 524/532 (98%)
Strand = Plus / Minus
Query: 1 tgaatccattctctggtcccattggattcctaattgactctacctccttttagcggtcca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 732 tgaatccattctctggtcccattggattcctaattgactctacctccttttagccgtcca 673
Query: 61 gcctcaggctgcttcagaccctaatgaggaaggttgttagtgcttacttcttcccaggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gcctcaggctgcttcagaccctaatgaggaaggttgttagtgcttacttcttcccaggtg 613
Query: 121 ggacagtgatagccaaagattcctgttattagctcaaattgcttatccaagtggggtcaa 180
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 612 ggacagtgatggccaaagattcctgttattagctcagattgcttatccaagtggggtcaa 553
Query: 181 aagacagtcagctcagaaaattctacctattgggagtgggtttatcccctaaaagccccc 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aagagagtcagctcagaaaattctacctattgggagtgggtttatcccctaaaagccccc 493
Query: 241 cttttagaggaagattgcatgcaggaaaaaagcggcatgcaaaggggcctactcccacta 300
|||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 492 cttttagaggaagattccatgcaggaaaaaagcggcatgcaaaggagcctacacccacta 433
Query: 301 ccaactggcaggtcaaaatcctgcttgtcactggcagatacccaagaacaaggcttcctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccaactggcaggtcaaaatcctgcttgtcactggcagatacccaagaacaaggcttcctt 373
Query: 361 tcccaccaaagtagaatggaccctgaagcttttcttgttcaggtgcctagaagcttcctt 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tccaaccaaagtagaatggaccctgaagcttttcttgttcaggtgcctagaagcttcctt 313
Query: 421 cagagccatgtgcacctgtaacttgtgtggaacactcctaagagtgcatcagcctcgtat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cagagccatgtgcacctgtaacttgtgtggaacactcctaagagtgcatcagcctcgtat 253
Query: 481 tttgatgtgatggctaacatgcacagaacaagtcaaatgtctgtgctcttgg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttgatgtgatggctaacatgcacagaacaagtcaaatgtctgtgctcttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
