BAC Information

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BAC

Clone NameMSMg01-336B14
Chromosome13 (Build37)
Map Location 59,372,374 - 59,372,873
singlet/doubletsinglet
Overlap genenone
Upstream geneGkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533
Downstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336B14.T7 (MSMg01no336_b14.b1)MSMg01-336B14.TJ (MSMg01no336_b14.g1)
ACCAG451200AG451201
length730738
length of high quality
(start - end)		503 (43 - 545)386 (72 - 457)
definitionCHROMAT_FILE: MSMg01no336_b14.b1 PHD_FILE: MSMg01no336_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:04 2005CHROMAT_FILE: MSMg01no336_b14.g1 PHD_FILE: MSMg01no336_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGACTCCTGTACTTTTCCTGGGCTCAGGATACACAGCCGCACTGTACT
ATCTTGTGATGCTGGAGAGAGGCAGAACCTCGAAGTCACTCAGCCACATG
GTCACAGGGTAAATGACAGGGCTGGATCTGTACACTGCAGCTAGTGACTT
CTCTGTTTTCTACTTATGATGGATTTTTGGAGACCCCACTCCACTGTAAG
TCAAAGAGCTCCTGTCCTTCCTCCCACTGGCAGGTGGGTGAGAGAAGATT
GGGATGGGAGCCATTTGCAGCCCAACCTGGAATCCCAAACCCGAAATCCC
ACTTTGCCCTATCCCTTTGCAACTTAGAGTCAAACAAAGCCTACCCAACT
GGGTTAAATTTTCTGACTGAGAACCAAAGCAAACACAGGGAAGCAAATAT
TCAATAACTCGGGCAGCTGAGAAAACATTAATATTTTCAGTGAACTTGAA
TCTAACTTTAAATTATTATAAATGAGAATCTTCCCATGACGTGTTTCCAA
GACTTTCCCAAATCAAACCACAGAGGACATCAGATAAGCACAAACTTCCA
GAAAGAGAAAAGCAGAAAGGGGCACTGACTGCATGCTCGTCATCTGTGGA
ATTAATAAGAAACTTCCCCACNCCCCCGCCAAGTACTCTGAGAAAAGCCC
CAAGCCTTCCACATCGGACCCAAAAGGAAA

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCGAATTC
AGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAGGCGTGTGCC
ACCACTGCCTGGCCAGTCTTTTTTTTTTTTTTAATTATGAATATATGGTT
TTTAAAAAATTTATTTTGCTTTTGCCTGCATGTGCATGTCTGTGCCATGT
GTACCAAGCCAGAAGAAGGCATCAGAGTCCCTAGAAGTGCAGTTCTAGGT
GGTTGGGAGCCACCGTGTGGGTGTTGGGTATTGAACCTGGGTCCTCTGAA
AGAGCAGCCAGTGCTCCTAACTGCTGAGCTGTCTCTCTGGCCCCAGAAAC
TTCCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGNNNNANNTGNNTTCCNNTTNTGGTATGAGTCTGTNNNGGAGTG
NGGTAGAGGNTNTGTTGGNTTTNTAGGTTTGGGGNNTTGAANNNNTGAAG
NGGATGGTTTTATAAGTTTAAGTGGGAAAATTTTGGNNTAATTGGATTTG
GTTTNTGTATTTATNAAAAANTTTTTTTGATTTTTGGGAATTTTTTTTTT
GGAAANATATTNNAATAATTNNANAATTGGATTTTAAGATTTNTTTTATT
TTGGGGGNAANGAAAAGAAAATATTTNAGGGTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_b14.b1 MSMg01no336_b14.b1 CHROMAT_FILE:
MSMg01no336_b14.b1 PHD_FILE: MSMg01no336_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:04 2005
         (503 letters)



>mm_chr13_59372171_59373073
          Length = 903

 Score =  928 bits (480), Expect = 0.0
 Identities = 495/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgactcctgtacttttcctgggctcaggatacacagccgcactgtactatctt 63
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 ggaattctgactcctgtacttttcctgggctcaggatacacagccacactgtactatctt 263

                                                                       
Query: 64  gtgatgctggagagaggcagaacctcgaagtcactcagccacatggtcacagggtaaatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgatgctggagagaggcagaacctcgaagtcactcagccacatggtcacagggtaaatg 323

                                                                       
Query: 124 acagggctggatctgtacactgcagctagtgacttctctgttttctacttatgatggatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acagggctggatctgtacactgcagctagtgacttctctgttttctacttatgatggatt 383

                                                                       
Query: 184 tttggagaccccactccactgtaagtcaaagagctcctgtccttcctcccactggcaggt 243
           |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 384 tttggagaccccacaccactgtaagtcaaagagctcctgtcctccctcccactggcgggt 443

                                                                       
Query: 244 gggtgagagaagattgggatgggagccatttgcagcccaacctggaatcccaaacccgaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggtgagagaagattgggatgggagccatttgcagcccaacctggaatcccaaacccgaa 503

                                                                       
Query: 304 atcccactttgccctatccctttgcaacttagagtcaaacaaagcctacccaactgggtt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atcccactttgccctatccctttgcaacttagagtcaaacaaagcctacccaactgggtt 563

                                                                       
Query: 364 aaattttctgactgagaaccaaagcaaacacagggaagcaaatattcaataactcgggca 423
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agattttctgactgagaaccaaagcaaacacagggaagcaaatattcaataactcgggca 623

                                                                       
Query: 424 gctgagaaaacattaatattttcagtgaacttgaatctaactttaaattattataaatga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctgagaaaacattaatattttcagtgaacttgaatctaactttaaattattataaatga 683

                               
Query: 484 gaatcttcccatgacgtgtt 503
           ||||||||||||||||||||
Sbjct: 684 gaatcttcccatgacgtgtt 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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