NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGATGGTGCATGCATTGAATCTGTAGATTGCTTACAGCAAGATAG
CCATTTTGACTATGTTAATCCTGCCAATCCATGAGCATGGAGATATTTCC
ATCTTATGAGATCTTCAATTTCTTTCTTCAGAGACTTGAAGTTCCTATCA
TACAGTTCTTTCACTTCCTTAGTTAGACTCACACCAAGGTATTTTATATT
ATTTGTGATTATTGTGAAGCATGATATTTCCCTAATTTCTTTCTCAGCCT
GTAAATCCTTTGTGTAAAGATAGGCCACTGATTTGTTTGAGTTAATTTTA
TATCCAGCTACTTCACTGAAGTTGTTTATCAGGTTTAGTTGTTCTCTAGT
GAAATTTTTACGGTCACTTAAATATACTATCATATCACCTGCAAAAAGTG
ATATTTTGACTTCTCCCTTTCCAAATTGTATCCCCTTGATCTCCTTTTGT
TGTCTAATTGCTCTGGCTAGAAATTCAAGTACTATATTGAATAGGTAGTG
AGGGAGTAGGCAGCCTTGTCTAGTTTCTGATTTTAGTGGGATTGCTTCAA
ATTTCTCTCCATTTANTTTGATGGTGGNACTGGGTTCTTGATATTGCTTT
TNATAAGGTAGGTGTGGGNCTTGAAACCTGATCTTTCCAGACTTTATCAT
GAAGGGGGGTAGATTTGT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTCCCTCTTTGTAAGCCTTTCAA
GAAGAGCTTAAAGTAACTTCTCTTAAACAAGGAGAATGTAAGCAATGCTT
AAGCTCAAGTGAGAAGGATAGAGGTGAGTTGGAAAATGGAGATGAACAGA
GGATCTATTTATGATCTGTTGTTAGATGCTCTTAGATTATGACAGCCCTG
CCTTGGGTATTTTATTAATTACTATAGTACCAATATTTTTAGTATCTACT
ATATTTTCAGATCCTTTTTGAAGAAAAAAATCAGTACAAGTTATGACTTT
ATGAGTAATCTCAAGGAATAGAAAAAAGAGGGTTTTAATCATTGTTTTCC
TGTCTACCCTTAGAGCCTGGCTTATCACCAGCTTTTTTATTTCACATCTT
CTCCTTGGCAAGGGGTAAGGAGTGAAGCAGACAATACAATCATGGGAATC
TCCAGACCTGGCTCAGTAATAAGAAATTCTTTGAAAATCCCTTATAGCTT
TGCTTCTCACGTTTTTTGTTTGTTTAGTTGGTTGGTTTTGTTTGTTTGTT
TTTTAATAGCGAGAGTAATAGTTTCCTTAAGTCAGTGGGATACTGTGAGA
ATAAGATTAAATGATGAATGCTCAAATCCTTTCCTAAACACAAAATGCCA
CTTGTAGACAA

Query= MSMg01no336_k11.g1 MSMg01no336_k11.g1 CHROMAT_FILE:
MSMg01no336_k11.g1 PHD_FILE: MSMg01no336_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:46 2005
         (377 letters)



>mm_chr13_80543300_80544076
          Length = 777

 Score =  714 bits (369), Expect = 0.0
 Identities = 375/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaaaaaatcagtacaagttatgactttatgagtaatctcaaggaatagaaaaaagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaaaaaaatcagtacaagttatgactttatgagtaatctcaaggaatagaaaaaagagg 381

                                                                       
Query: 61  gttttaatcattgttttcctgtctacccttagagcctggcttatcaccagcttttttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 gttttaatcattgttttcctgtctacccttagagcctggcttatcactagcttttttatt 321

                                                                       
Query: 121 tcacatcttctccttggcaaggggtaaggagtgaagcagacaatacaatcatgggaatct 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 tcacatcttctccttggcaaggggtaaggagtgaggcagacaatacaatcatgggaatct 261

                                                                       
Query: 181 ccagacctggctcagtaataagaaattctttgaaaatcccttatagctttgcttctcacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccagacctggctcagtaataagaaattctttgaaaatcccttatagctttgcttctcacg 201

                                                                       
Query: 241 ttttttgtttgtttagttggttggttttgtttgtttgttttttaatagcgagagtaatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttttttgtttgtttagttggttggttttgtttgtttgttttttaatagcgagagtaatag 141

                                                                       
Query: 301 tttccttaagtcagtgggatactgtgagaataagattaaatgatgaatgctcaaatcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tttccttaagtcagtgggatactgtgagaataagattaaatgatgaatgctcaaatcctt 81

                            
Query: 361 tcctaaacacaaaatgc 377
           |||||||||||||||||
Sbjct: 80  tcctaaacacaaaatgc 64


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)