BAC Information

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BAC

Clone NameMSMg01-336O13
Chromosome13 (Build37)
Map Location 10,258,690 - 10,259,197
singlet/doubletsinglet
Overlap geneChrm3
Upstream geneLOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336O13.T7 (MSMg01no336_o13.b1)MSMg01-336O13.TJ (MSMg01no336_o13.g1)
ACCAG451815AG451816
length730836
length of high quality
(start - end)		517 (46 - 562)66 (70 - 135)
definitionCHROMAT_FILE: MSMg01no336_o13.b1 PHD_FILE: MSMg01no336_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:06 2005CHROMAT_FILE: MSMg01no336_o13.g1 PHD_FILE: MSMg01no336_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAATGCTTCCAATGTTCCCCTTGGTTTACAAACATACAAAGTTG
ACTTGTCTCATGTTTTCCAGCCCATTATCCATTTCACAATACACTGGTGA
ACTATCTTCTAAAATGCAGATCTTTCAATAGATTAAAAACACTCAGATTG
TGAGTCAATGATCCAATGTTGCAAGACAACCAGGAAGAGAGAAAATGAGG
TGGGATTAGAGCAGACCTCACTTAATCTCTGATTCTGAATCAATTAATCA
ATAAAATATATGTTAAATTCCCACCAAGTCAGAAGAATTTTAGTAAGCTC
CATGGTCAATTTTCCAAGAATGTGAACACTGAATTATAACTAAGGGCTTT
GGGGTAAAATAGTAAGAGAAAAGACCAGACTTCTCTGAGTTAAGGGAAGG
AACAGGGACTACAGGGCAGAGCCATTACAACCCTAAGCCTTAGGCAAAGT
AAGAGTATTACAAGCAATCAGCTACTTGCAGCACACACAAACCCCACTAA
ACTAGGATCCAAAGAGACCTACTACTGCTATTCAATGAAAAAGACATATG
TTTACACTTGATGCACAAACATATCATTGACTTTTATTGAAAGCTTCTGG
CACTATGATAATTACTCAAGGCTGGAAAAACTTGGAAATATTTTGCCACC
TTTAAAAATCCTGGGTTGTGGGAAAAACCA

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAATACAGAGAAACATATGCATAGTTCCAGA
CATAAAGGTCTTCACATAAGTTATGGAAACTAAATTTGGGGGCAGNACTT
TGTGCCTCCGAACTCNAATTTTGNCACCNCATTGTGTGTATNGAGGAACC
GGATCGGAGAGAGAAACNNTCCGAATGGTTGGAGGTAATAAATACCCACC
CAAACTATGATTCTTAAGCCAAAACCCTGGATGGGGGTANGAAAAACTTA
GGGATAAGAACTTTCTGGAGGGCCCAAAAGGAGGGGTTAACCCGTTGGGG
AAACATTAAAAACTTCTCCCTTTTGGAAAAGGAACAGGGTTATTCCCCCC
CCCCCCTCCCCGGGGGGCCCCAAAATTCCTTAAATTTTTTTTTCGGGGGG
GGGGACACCCTTGGGGGGGGGGGGGCCCAATCCCCCCCCAAAAGGGCGGC
CGGGGGAAAAAAACAAGGGCGTGTTTTTTAAGAAAAAAAAAAAACCCTTG
TGGTCCCCTCTTTTGGGGGCGCGCCTTTTTTTTTTTCCCCTTCGGGGGGG
GCGGGGGCGGGGGGAGACCCCCCCGCGGGAGGATAANAGGGGGGGCCCCC
CCCCCCCTCTCCNCCNNNCCCTCCGCAGGAGAGAAGAAAAGAAAATTTTC
TTTCCCGCGCCCCCTCTTCCCTTTTCTAAGAGAATTTTTTTTATTTTTAA
NACCCTCCCCTTCCTTTTTTTTNTTTCTTTTATATATGAGGGAGAGGAGG
GGGGGGGGTNCTCTCTCTACTTCCTTTCTCGTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_o13.b1 MSMg01no336_o13.b1 CHROMAT_FILE:
MSMg01no336_o13.b1 PHD_FILE: MSMg01no336_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:06 2005
         (517 letters)



>mm_chr13_10258486_10259397
          Length = 912

 Score =  961 bits (497), Expect = 0.0
 Identities = 507/513 (98%), Gaps = 5/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaatgcttccaatgttccccttggtttacaaacatacaaagttgacttgtctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaatgcttccaatgttccccttggtttacaaacatacaaagttgacttgtctc 264

                                                                       
Query: 65  atgttttccagcccattatccatttcacaatacactggtgaactatcttctaaaatgcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgttttccagcccattatccatttcacaatacactggtgaactatcttctaaaatgcag 324

                                                                       
Query: 125 atctttcaatagattaaaaacactcagattgtgagtcaatgatccaatgttgcaagacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctttcaatagattaaaaacactcagattgtgagtcaatgatccaatgttgcaagacaa 384

                                                                       
Query: 185 ccaggaagagagaaaatgaggtgggattagagcagacctcacttaatctctgattctgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaggaagagagaaaatgaggtgggattagagcagacctcacttaatctctgattctgaa 444

                                                                       
Query: 245 tcaattaatcaataaaatatatgttaaattcccaccaagtcagaagaattttagtaagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaattaatcaataaaatatatgttaaattcccaccaagtcagaagaattttagtaagct 504

                                                                       
Query: 305 ccatggtcaattttccaagaatgtgaacactgaattataactaagggctttggggtaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccatggtcaattttccaagaatgtgaacactgaattataactaagggctttggggtaaaa 564

                                                                       
Query: 365 tagtaagagaaaagaccagacttctctgagttaagggaaggaacagggactacagggcag 424
           ||||||||||||||||     |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagtaagagaaaagac-----ttctctgagttaagggaaggaacagggactacagggcag 619

                                                                       
Query: 425 agccattacaaccctaagccttaggcaaagtaagagtattacaagcaatcagctacttgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agccattacaaccctaagccttaggcaaagtaagagtattacaagcaatcagctacttgc 679

                                            
Query: 485 agcacacacaaaccccactaaactaggatccaa 517
           |||||||||||||||||||||||||||| ||||
Sbjct: 680 agcacacacaaaccccactaaactaggacccaa 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 912
Length adjustment: 10
Effective length of query: 507
Effective length of database: 902
Effective search space:   457314
Effective search space used:   457314
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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