NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTAATTTCCCTAGGTTGGCTAGCCAGCAAGTTCCAGGAACC
TGCTTGTCCCCATCAAACTCTAGTGCTGGGCATATGCATGCTTGCCACCA
GCTCAACTCTTTACATGGGTGTGAGTATCCAAACTCGGGTCTGTGTGCAG
CCATTACTCTATAGAGTTATCTCCCCACAAGGGGTCTGGGGACATGGAAA
GTGGTCTTTTCACACTGAGAGGTTTTGCTCTTTTGCTTCTGATCAAGAAA
GTGTCCAGAGACCTCACAATGTGGTTGAAGTCGGTAAGTTTACTTTTGTG
AATCACTACCTCCCATCCAGGAGGCTGTCTTGTATCTTTAAAAACCAGTG
TGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGTCTGTCTGTCTGTCTGTCTTCTAGACATTCTTTCTTCACTAAAGTTCA
GTGTTTTGAGCATATTCCCTGAAGTTCTTCTAAGAGAGGTTAGGAACTGG
AGGGTGACTGAATTCAAAGGTGGAGATCTGGAGAGAGCACACAGGTTGCT
CAACATAGGTTGGTCTCAGGAGCTGGAACATTCATCTTACAAGGACTCCC
CATTTTTTACGGGCCTCTCTTCTCTGGTTTTCTCATAAATCTGTGCCAAC
TATGTGTTCATCTTAACAGAAATGCTCT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTACCTAGCTCTGTTCCCCATTTTAA
AATAGAGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAATTCTTTGTATG
TATTGGATATTAGCCCTCTATTGGATGTAGGATTGGTAAAGATCTTTTCC
CAATCAGTTGGTTGCCGTTTTGTCCTGTTGACAGTGTCCTTTGCCTTACA
GAAGCTTTGCAATTTTATGAGGTCCCATCTGTCGATTCTTGGTCTTAGAG
CACAAGCCATTGGTGTTCATAAACTTTTCCCTTGTGCCCATGTGTTCGAG
GCTCTTCCCCACTTTCTCTTTTATTAGATTCAGTGCATCTGGTTTTATGT
GGAGTTCCTTGATCCACTTAGACTTGAGCTTTGTACAAGGAAATAAGAAT
GGATCAATTTGCATTCTTCTACATGTTGACCACAGAGGCACATTTTAAAT
ATCCTCACTTTCCATTTCTGTCTCTGTGCCTGAGGCCCAGTAGATGGCCC
TTCCTGTGAGTTTGTTCAGTGGGGTCTCATAATCTCTGCTTTCCCACCCC
TCCCCTCCTCTCTCCTCTCNTCTCTCTCCTCTCTCCTCTTTTCTCTTTTC
TTTTTTTTTTTTCTTTTTNCCCCCCTTTCTCCTTTTTTTTCTTTTCTCCT
TCCCTTCTTTTTTTTGTTTTCTATAAATANTTTTTTTAACACCCTTCCTT
CCA

Query= MSMg01no337_e12.b1 MSMg01no337_e12.b1 CHROMAT_FILE:
MSMg01no337_e12.b1 PHD_FILE: MSMg01no337_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:37 2005
         (594 letters)



>mm_chr13_98606043_98607036
          Length = 994

 Score =  646 bits (334), Expect = 0.0
 Identities = 465/590 (78%), Gaps = 123/590 (20%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactaatttccctaggttggctagccagcaagttccaggaacctgcttgtcccca 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactaatttggctaggttggctagccagcaagttccaggaacctgcttgtcccca 264

                                                                       
Query: 65  tcaaactctagtgctgggcatatgcatgcttgccaccagctcaactctttacatgggtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaaactctagtgctgggcatatgcatgcttgccaccagctcaactctttacatgggtgt 324

                                                                       
Query: 125 gagtatccaaactcgggtctgtgtgcagccattactctatagagttatctccccacaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagtatccaaactcgggtctgtgtgcagccattactctatagagttatctccccacaagg 384

                                                                       
Query: 185 ggtctggggacatggaaagtggtcttttcacactgagaggttttgctcttttgcttctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtctggggacatggaaagtggtcttttcacactgagaggttttgctcttttgcttctga 444

                                                                       
Query: 245 tcaagaaagtgtccagagacctcacaatgtggttgaagtcggtaagtttacttttgtgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaagaaagtgtccagagacctcacaatgtggttgaagtcggtaagtttacttttgtgaa 504

                                                                       
Query: 305 tcactacctcccatccaggaggctgtcttgtatctttaaaaaccagtgtgtgtgtgtgtg 364
           |||||||                                                     
Sbjct: 505 tcactac----------------------------------------------------- 511

                                                                       
Query: 365 tgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctt 424
                                                                       
Sbjct: 511 ------------------------------------------------------------ 511

                                                                       
Query: 425 ctagacattctttcttcactaaagttcagtgttttgagcatattccctgaagttcttcta 484
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ----------tttcttcactaaagttcagtgttttgagcatattccctgaagttcttcta 561

                                                                       
Query: 485 agagaggttaggaactggagggtgactgaattcaaaggtggagatctggagagagcacac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agagaggttaggaactggagggtgactgaattcaaaggtggagatctggagagagcacac 621

                                                             
Query: 545 aggttgctcaacataggttggtctcaggagctggaacattcatcttacaa 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aggttgctcaacataggttggtctcaggagctggaacattcatcttacaa 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)