BAC Information

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BAC

Clone NameMSMg01-337G07
Chromosome13 (Build37)
Map Location 62,404,515 - 62,405,107
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962
Downstream geneLOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337G07.T7 (MSMg01no337_g07.b1)MSMg01-337G07.TJ (MSMg01no337_g07.g1)
ACCAG452179AG452180
length747773
length of high quality
(start - end)		596 (46 - 641)493 (77 - 569)
definitionCHROMAT_FILE: MSMg01no337_g07.b1 PHD_FILE: MSMg01no337_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:45 2005CHROMAT_FILE: MSMg01no337_g07.g1 PHD_FILE: MSMg01no337_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATACTGTTGCGAAAGCCTATGAATGTATTTAATATTCATACTCTT
AATTATGAACATATTTGTATTGGTAAGAAACTGTCTGAATATAAACCATG
TGGTAAAGCCTATCCCAGCACACTTATCTCCTAATGCAGCAAGGAGCACA
CACTGGAGTAAGACAGCGACAGACACAGAGGAGAGAGACTTTATGAATGA
ACACAGTGTGGCAAACCTTTGCATATCAGAGTCATCTTTGAACATGTAAA
AGAGCACATTATGTATCTCATAATACATAAAAGAATGCATCAGTGAGCTA
AACCCTGTGTGAATAATGTGGTAAGGCCTTTGCAGGTGGCATGTATAAAA
TAACCCTTGAAGGACACCTCATGAAAATCAGCAATGTGTTATAGATTGTA
TATGTAGAAGTTGTTTTGGAAATCATGAGAAAAATCAATGTGCAATGAAG
TCTATAAGTGTAGTCACTGTGGTAAAATTTTGTACTTCACAGTATCTTTA
TGCAAGAGCAAAAGCTCTAGCATGTGTCAGGATTTCCCATGTCCAATCTA
TTTAAATATTAGTGAAGCAGGTGGCCTCTATTTGGACAGGGAATAGAAGT
GGAGCTAATAGTTGTAAAGAGATGGGTAGGGGAAAAAGGAGCCAAGATGC
CCATGGAATGCCGGGATGATTCTTAACCATTGGGGCTGTTAATAGCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCTCTAGGCATTGAAGCAAGAT
GTGGCATTTAAATGGGAATGTTGCCCTTTGCTCCTATGTTGCATACTTAT
TTTCCAGTACCTGGAAGTCTTTCAGAGGAGTAGGGGGAAAGTATAGGATA
ATCATTGTGGGGAATTTGGGTGACAGCTACCTCAATATCTAAGGTGGGAG
ATATTTGCCACCATAAAAAACAAAAAGCTCACTTTCAGCTTTTGGATTCA
AGGTAGGTACTTTATCTACTTCACAGAGAAGAGGGCCTATCTTATTTTCA
TCCTAATCTGTCACTTGTGCTCCCCAAGTCCTATTGCTTATTAAAGAGGG
GAACTCTTAAGTAGGAGAGTTAGCCCCAGGCAATGAGTTCCCTATTTGGC
TAATCAATGCAAGTCAGTCAGTCCTTGAATCATACACATAACCAATAAAA
ATGCAGTCAGCAAGTTTTATTTATGTATTTGAGTCTTCATAGTCACACAT
GTATGTAACAAGGAAGAAACTGGCAGGGAAGAATTTATGATGGAGAAGGG
AGGAAGTAAGGGGATAAATTTGTCAAGGGAATTTTCCTCATGTGCCCTCT
ATATAGATCGTTTGTTTCTCCCCCCTCCTCTCTTTATGCCCCTATTTTTT
TTTTTTTTTATTTCTTCGCTCCTTTTCTCCCCTTATTTTTTTTTTCCGTT
TGCCTTTTCTATCCCCTCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_g07.b1 MSMg01no337_g07.b1 CHROMAT_FILE:
MSMg01no337_g07.b1 PHD_FILE: MSMg01no337_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:45 2005
         (596 letters)



>mm_chr13_62404380_62405376
          Length = 997

 Score = 1116 bits (577), Expect = 0.0
 Identities = 589/593 (99%), Gaps = 1/593 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatactgttgcgaaagcctatgaatgtatttaatattcatactcttaattatgaa 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gaattcatactgtagagaaagcctatgaatgtatttaatattcatactcttaattatgaa 669

                                                                       
Query: 65  catatttgtattggtaagaaactgtctgaatataaaccatgtggtaaagcctatcccagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 catatttgtattggtaagaaactgtctgaatataaaccatgtggtaaagcctatcccagc 609

                                                                       
Query: 125 acacttatctcctaatgcagcaaggagcacacactggagtaagacagcgacagacacaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 acacttatctcctaatgcagcaaggagcacacactggagtaagacagcgacagacacaga 549

                                                                       
Query: 185 ggagagagactttatgaatgaacacagtgtggcaaacctttgcatatcagagtcatcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggagagagactttatgaatgaacacagtgtggcaaacctttgcatatcagagtcatcttt 489

                                                                       
Query: 245 gaacatgtaaaagagcacattatgtatctcataatacataaaagaatgcatcagtgagct 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 488 gaacatgtaaaagagcacattatgtatctcagaatacataaaagaatgcatcagtgagct 429

                                                                       
Query: 305 aaaccctgtgtgaataatgtggtaaggcctttgcaggtggcatgtataaaataacccttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaccctgtgtgaataatgtggtaaggcctttgcaggtggcatgtataaaataacccttg 369

                                                                       
Query: 365 aaggacacctcatgaaaatcagcaatgtgttatagattgtatatgtagaagttgttttgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaggacacctcatgaaaatcagcaatgtgttatagattgtatatgtagaagttgttttgg 309

                                                                       
Query: 425 aaatcatgag-aaaaatcaatgtgcaatgaagtctataagtgtagtcactgtggtaaaat 483
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaatcatgagaaaaaatcaatgtgcaatgaagtctataagtgtagtcactgtggtaaaat 249

                                                                       
Query: 484 tttgtacttcacagtatctttatgcaagagcaaaagctctagcatgtgtcaggatttccc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttgtacttcacagtatctttatgcaagagcaaaagctctagcatgtgtcaggatttccc 189

                                                                
Query: 544 atgtccaatctatttaaatattagtgaagcaggtggcctctatttggacaggg 596
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 atgtccaatctatttaaatattagtgaagcaggtggcctctatttggacaggg 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 997
Length adjustment: 10
Effective length of query: 586
Effective length of database: 987
Effective search space:   578382
Effective search space used:   578382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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