Query= MSMg01no337_j03.b1 MSMg01no337_j03.b1 CHROMAT_FILE:
MSMg01no337_j03.b1 PHD_FILE: MSMg01no337_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:59 2005
(524 letters)
>mm_chr13_39735073_39735997
Length = 925
Score = 878 bits (454), Expect = 0.0
Identities = 487/498 (97%), Gaps = 2/498 (0%)
Strand = Plus / Minus
Query: 28 ttttcaaacataaaatttttaggaatatcatcataaataactcttctcaaagcaattagg 87
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ttttcaaacataaaatttttaggaatatcatcataaataactcttctcaaagcaattaga 866
Query: 88 ttgtttttctatcatatttctctgtggttttgggtttagaatattaacatttatactcta 147
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 865 ttg-ttttctatcatatttctctgtggttttgggtttagaatattaacatttatattcta 807
Query: 148 agtcatgagattattttttctttatggattaacaaaatacagttgatggagagaggaaac 207
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 806 agtcatgagattattttttctttatggattaacaaaatacagatgatggagagaggaaac 747
Query: 208 ttttatatttaaaattaatttctacaattgcaaacatgccaagactactatgcaaattag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttttatatttaaaattaatttctacaattgcaaacatgccaagactactatgcaaattag 687
Query: 268 aggacatttaaggatatacaaaagaaagtcaataattagctcaaacaataagcaccttga 327
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aggatatttaaggatatacaaaagaaagtcaataattagctcaaacaataagcaccttgg 627
Query: 328 catttatatctagttaatcata-tttttttcaccttcagggaggcaacatctaaatatgt 386
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 626 catttatatctagttaatcatattttttttcaccttcaacgaggcaacatctaaatatgt 567
Query: 387 gtccaaaattcccaacttttatcttactgttggccgttcatcttgttaagcacctggcct 446
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 566 gtccaaaattcccaacttttatcttacttttggccgttcatcttgtttagcacctggcct 507
Query: 447 aattgtcaagtttaaaaccttattagtggatacaagtctctatttagacatttcttttag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aattgtcaagtttaaaaccttattagtggatacaagtctctatttagacatttcttttag 447
Query: 507 cttttccttcttcatgta 524
||||||||||||||||||
Sbjct: 446 cttttccttcttcatgta 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space: 470310
Effective search space used: 470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_j03.g1 MSMg01no337_j03.g1 CHROMAT_FILE:
MSMg01no337_j03.g1 PHD_FILE: MSMg01no337_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:59 2005
(498 letters)
>mm_chr13_39523303_39524200
Length = 898
Score = 948 bits (490), Expect = 0.0
Identities = 496/498 (99%)
Strand = Plus / Plus
Query: 1 caagattgcaaacatcaaacaaaacaccaaatatgaattcatttgacttggttgtagaat 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 caagattgcaaacatcaaacaaaacaccaaatatgaattcgtttgacttggttgtagaat 260
Query: 61 aaattgcttcttggtcaaatgtgctgatgagtcaacctgacagctgggtgctttctcgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattgcttcttggtcaaatgtgctgatgagtcaacctgacagctgggtgctttctcgcc 320
Query: 121 cacgtttctgtcctctacatctgtcccctaaaaagtaagagtgacgaaaaccaatattca 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cacgtttctgtcctctacatctgtcccctaaaaagcaagagtgacgaaaaccaatattca 380
Query: 181 acaaaatggctttgagaatggcggcacgtctattccacctgacaaaccatggcataggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaaatggctttgagaatggcggcacgtctattccacctgacaaaccatggcataggtg 440
Query: 241 gtagaagggactgcttatagaggaaggaacagggcatctgactttcaaaggtaaacacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagaagggactgcttatagaggaaggaacagggcatctgactttcaaaggtaaacacaa 500
Query: 301 gactggtggccagggatttacttatcatgtagaaaaattaatttctcctttgaaattaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactggtggccagggatttacttatcatgtagaaaaattaatttctcctttgaaattaag 560
Query: 361 aaagacaaacttcgcctgggacataacttgtaatgaaggagggaagtgctacagcccatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagacaaacttcgcctgggacataacttgtaatgaaggagggaagtgctacagcccatg 620
Query: 421 tattacatacatgtgcacgtgcccttctgtctgtgggatatatatgccaataagtgttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattacatacatgtgcacgtgcccttctgtctgtgggatatatatgccaataagtgttca 680
Query: 481 aaattttaatgataattc 498
||||||||||||||||||
Sbjct: 681 aaattttaatgataattc 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
