Query= MSMg01no338_d18.b1 MSMg01no338_d18.b1 CHROMAT_FILE:
MSMg01no338_d18.b1 PHD_FILE: MSMg01no338_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:49 2005
(640 letters)
>mm_chr13_109796252_109797292
Length = 1041
Score = 1096 bits (567), Expect = 0.0
Identities = 622/643 (96%), Gaps = 8/643 (1%)
Strand = Plus / Plus
Query: 5 gaattctcctgtgtc-cacccttaggaaggagaacactaatcttttttccattagttctt 63
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattctcctgtgtcatacccttaggaaggagaacactaatcttatttccattagttctt 264
Query: 64 tttgaaaagctgctcctagatgtttgtctaaaagcactctattctctagacttcctttat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgaaaagctgctcctagatgtttgtctaaaagcactctattctctagacttcctttat 324
Query: 124 tatatttctgtggaggtcacagtgcagttggcccagaacctggaagccgatttctctgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatatttctgtggaggtcacagtgcagttggcccagaacctggaagccgatttctctgaa 384
Query: 184 gttttaagtctgacaatgatacacacatgaactaaagattttgctttcatcagcttgatt 243
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 gttttaagtctgacaatgatacacacatgaactaaagatttcgctttcatcagcttgatt 444
Query: 244 tataggatttaaaccaattaactgtaggaaaaagaatcaacatcttaaaatgatgtatat 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 tataggatttaaaccaattaactgtaggaaaaagaatcaacatcttaaaatgatgtatgt 504
Query: 304 atctccatcctaaacaagaaaatatgagtttattgtaaccagtcctaaggaagggctgtg 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 505 atctccatcctaaacaagaaaatatgagtttattgtaaccaatcctaaggaagggctgtg 564
Query: 364 ttggttccgttcctgtgcaggcgctgagctgctgaagttgaacggggcttctgaccagct 423
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 565 ttggttccgttcctgtgcaggcgctgagctgctgaagctgagtggggcttctgaccagct 624
Query: 424 tgggcttgctgtctctgggttactgaccctcttctagtacaaacagtcaatgtttcccat 483
||||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||
Sbjct: 625 tgggcttgctgtctctgggttgcagaccctcttctaatataaacagtcaatgtttcccat 684
Query: 484 ctgtctaacttgatattagtttatagttgacat-----atgtacatacctctattatttt 538
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 685 ctgtctaacttgatattagtttatagttgacattttctatgtacatacctctattatttt 744
Query: 539 taattataatatgtaatatattaatatatgtaattgtaatatgtaatatatgtaattatc 598
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 745 -aattataatatgtaatatattaatatatgtaattgtaatatgcaatatatgtaattatc 803
Query: 599 tctattatccttgacgccttctggt-attctgtaatatccact 640
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 804 tctattatccttgacgccttctggttattctgtaatatccact 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space: 649530
Effective search space used: 649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_d18.g1 MSMg01no338_d18.g1 CHROMAT_FILE:
MSMg01no338_d18.g1 PHD_FILE: MSMg01no338_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:49 2005
(557 letters)
>mm_chr13_109955410_109956366
Length = 957
Score = 696 bits (360), Expect = 0.0
Identities = 369/372 (99%)
Strand = Plus / Minus
Query: 186 tgagcttggttcctagcattcacttggtagctcacaacctctcttaggtacctgcagttc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tgagcttggttcctagcattcacttggtagctcacaacctctcttaggtacctgcagttc 898
Query: 246 taggggattcccatgctctctgctggtccccgcaggcttctgcatgcacatgctatacaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 taggggattcccatgctctctgctggtccccgcaggcttctgcatgcacatgctatacaa 838
Query: 306 aaactcaaaaaactcacacaggtaaactatatatatatatatatatatatatatatatat 365
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 aaacgcaaaaaaatcacacaggtaaactatatatatatatatatatatatatatatatat 778
Query: 366 atatatatatatatatatatttgtttgtctatctatctctctatataaacaaataaatct 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 atatatatatatatatatatttgtttgtctatctatctctctatataaacaaataaatct 718
Query: 426 ttagaaacaaagaatacttgttccagtgaaagcaaatcttaaccacaaatatgatttcag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 717 ttagaaacaaagaatacttgttccagtgaaagcaaatcttaaccacaaatatgattttag 658
Query: 486 taacaaagctggttgattttttatccctaaagctatttcctattctgaaaaacaccatgt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 taacaaagctggttgattttttatccctaaagctatttcctattctgaaaaacaccatgt 598
Query: 546 gaaaaatatcca 557
||||||||||||
Sbjct: 597 gaaaaatatcca 586
Score = 101 bits (52), Expect = 2e-25
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 334 atatatatatatatatatatatatatatatatatatatatatatatatatat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 atatatatatatatatatatatatatatatatatatatatatatatatatat 809
Score = 101 bits (52), Expect = 2e-25
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 333 tatatatatatatatatatatatatatatatatatatatatatatatatata 384
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tatatatatatatatatatatatatatatatatatatatatatatatatata 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 109
Number of extensions: 51
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 11
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
