BAC Information

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BAC

Clone NameMSMg01-338G21
Chromosome13 (Build37)
Map Location 4,911,142 - 4,911,670
singlet/doubletsinglet
Overlap genenone
Upstream geneNet1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338G21.T7 (MSMg01no338_g21.b1)MSMg01-338G21.TJ (MSMg01no338_g21.g1)
ACCAG452960AG452961
length761736
length of high quality
(start - end)
469 (22 - 490)529 (74 - 602)
definitionCHROMAT_FILE: MSMg01no338_g21.b1 PHD_FILE: MSMg01no338_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:03 2005CHROMAT_FILE: MSMg01no338_g21.g1 PHD_FILE: MSMg01no338_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGACTCCTATAGGGACCGGATCCGCGGAATTCTCTAGAGGAATCTCAAAA
GGATGAAAAATACTTAAGGGGATGTTAAACATCCTTGGCCACCAGGGTAA
TGTCAATCAAACCTACTTCGGGATTTCTGTCAGGAGGGCTATAATGGGTT
ACAAGTGGCAGCTCATGCTGGCAAGGATGCGATGCAAGGGGGACTCTCCT
ACATTGCTGCTAGGAGTGCAAACATGTAAAGCCACTCTGGAAATCAATAT
GGATGTTTCTCAGAAATGTAGGAAGCAATTTACCTCACAACCCAACTATA
CCACACTTAGACATATACCAAAGGACAGTCCATCATACCATTGAGGCTTT
ATTCATAAGAGACAGATACTGGAAACAACATAGATGGTTCTTCAACTGGA
AAAGAAATTATAAAAAAATGGTATATTTACACAATGGAGTATTACTCTCC
CTTTTTTATTTTTTATTGGATATTTTCTTTACTTACATTTCAAATGTTAT
CCCCTTTCCCAGTTTTCCCCACTGGAAACTCTCTCATTCTTCCTCCCCCT
GCTTAATGAATGGNATTTTCCCACCCAACAANCNAACCATTCTTGGTTTT
TCCTACCTTGGGGGATCCAAAATTTTCTGGGACAAAGGGGCCCTTTGTTT
TCATGAATGCCCGAAAAGGTTCCCCTCCGCTACAATTTGGGGTGGGAGGC
CTGGGTTCCCCCCATAGGTAACTTGGGGCTGGGGTTTAAATCCTCCGAGA
TTTATGGGGTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGATCTGATATCTTTAAGGGAGTAGT
TGATTAAGATGATAGCCCCCCAAATGTGACTAGTCTGGACTACTAACATT
AATGAGTGTTACTGTTTGACATATTGGCCACAAGTTTGTCTTTTAAACAT
TGAGTTCCAAATGTGTCATGTCATTGTTAAGGCACTGGGGCCCCAGGAAA
TGGAAGTAGGTCATGGGGAGCAATCTCTGAAGGTAATACCTGTTGTTAAT
ACTGATTTGCCACTTCTATCTTCAGACCCACTGTAATGTGGAGACCTCAT
GCTATACTGTGCCACCCCTATGGATTGAGATCCACCATCATGACTTGCTT
GCTATTATGTACTAAAATTCTGAATCCATGAGCCAAAATCAACCCTTCTT
GCTCAAGTAGCTTCTGTAAGTTATTTTGTCAAACCATGATTTAGGATGAG
CTGTCAACTATGAAAAGCCCCATCTCCCCTGTTTATATTTCCCAGTGCTA
TGTAGAACAGGAAGCTTTGGTATTCATCAGTAAGCTCTGTCCCTGCTAAC
CAAACAGTGGGTTCACCAGGACTCTCCTTCTCACGAGGACCAAATCATGG
GTGGAGTTGTTTTGATTCCCCAGAANAAGAAAAAAAAACAAATAGTGGCT
ATATAACTAACCAACCAAAAAATGCTTAAATTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_g21.g1 MSMg01no338_g21.g1 CHROMAT_FILE:
MSMg01no338_g21.g1 PHD_FILE: MSMg01no338_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:03 2005
         (529 letters)



>mm_chr13_4910942_4911870
          Length = 929

 Score =  992 bits (513), Expect = 0.0
 Identities = 525/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagatctgatatctttaagggagtagttgattaagatgatagccccccaaatgtgactag 60
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 201 aagatctgatatctttaagggagtagttgattacgatgataggcccccaaatgtgactag 260

                                                                       
Query: 61  tctggactactaacattaatgagtgttactgtttgacatattggccacaagtttgtcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctggactactaacattaatgagtgttactgtttgacatattggccacaagtttgtcttt 320

                                                                       
Query: 121 taaacattgagttccaaatgtgtcatgtcattgttaaggcactggggccccaggaaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacattgagttccaaatgtgtcatgtcattgttaaggcactggggccccaggaaatgg 380

                                                                       
Query: 181 aagtaggtcatggggagcaatctctgaaggtaatacctgttgttaatactgatttgccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtaggtcatggggagcaatctctgaaggtaatacctgttgttaatactgatttgccac 440

                                                                       
Query: 241 ttctatcttcagacccactgtaatgtggagacctcatgctatactgtgccacccctatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctatcttcagacccactgtaatgtggagacctcatgctatactgtgccacccctatgg 500

                                                                       
Query: 301 attgagatccaccatcatgacttgcttgctattatgtactaaaattctgaatccatgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgagatccaccatcatgacttgcttgctattatgtactaaaattctgaatccatgagc 560

                                                                       
Query: 361 caaaatcaacccttcttgctcaagtagcttctgtaagttattttgtcaaaccatgattta 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 caaaatcaacctttcttgctcaagtagcttctgtaagttattttgtcaaaccatgatcta 620

                                                                       
Query: 421 ggatgagctgtcaactatgaaaagccccatctcccctgtttatatttcccagtgctatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggatgagctgtcaactatgaaaagccccatctcccctgtttatatttcccagtgctatgt 680

                                                            
Query: 481 agaacaggaagctttggtattcatcagtaagctctgtccctgctaacca 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaacaggaagctttggtattcatcagtaagctctgtccctgctaacca 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)