BAC Information

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BAC

Clone NameMSMg01-339F20
Chromosome13 (Build37)
Map Location 47,023,550 - 47,124,184
singlet/doubletdoublet
Overlap geneKif13a, LOC544928, Nhlrc1, Tpmt
Upstream geneAtxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153
Downstream geneAof1, Dek, LOC100039761, Ibrdc2, 4931429P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339F20.T7 (MSMg01no339_f20.b1)MSMg01-339F20.TJ (MSMg01no339_f20.g1)
ACCAG453667AG453668
length755734
length of high quality
(start - end)		579 (73 - 651)469 (56 - 524)
definitionCHROMAT_FILE: MSMg01no339_f20.b1 PHD_FILE: MSMg01no339_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:10 2005CHROMAT_FILE: MSMg01no339_f20.g1 PHD_FILE: MSMg01no339_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,023,550 - 47,024,128)(47,123,719 - 47,124,184)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCATTCTTCTCCCTCATAACAATCTGACCCCCAAAATTAGCAAGG
CTGGGCTGCAGTGGGGTATGATTATAGAAGGAAGCAGCTGCCTCGCTTAG
CAATAAAGTAACAAACCCTACTCACAATTGGGTTTCAGGGAAACTTTAAA
GAGCAAAAATCCACTCATTATGGAGCTCATCAACCAACAGGTGACTTTCA
GGGTCAAACTCGTACTCATTTCCAAGCCGAATCGGAATCCCGGTTTTCTT
TTCTATTTTTATAAGGTCCTACTATGCCATAACGAATGAATCCCAACCAA
TTTCTTCTCAGGGGCTTACCATAAAAATGCCAAATATTCACACTATTTTA
GGGCGTTTTCCCATACCATTGCATGGAACACAGTAGAATTAATAAGGATC
CCACAGTCAGGACTTTTCAAATGCAAATGCCTTGCCATCTAGAAAATGCA
GCCCCTTTTAACATTCCCCCATCCCAGTGTCTAAACAGCTCCGTATCAGC
ACTCTGTCTGTTTCCTCGAAAATCAAAATTCCCGAATTACTTTCAGACAC
CATCTCAACTCACCACCTCCAACAACCTACATACAGATTTTAAATGACCC
TAGCCTTGTACTTCGGTGTTTGATTTCTTAAGCTCCCAGCCCCCATTTCA
TATAACACATCCTATACAGTTCTGCGAAAAGGGGCATACAACGTAAAAAT
CGCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTTTCCCTGACTTATCTCACGGGAAGCACACTGCTTATGTGCAT
GAAGATAATTCTGGGCTAATGAGAACAGTGGACTCTTCCACACCATCCAG
GTTTTCTTACACTCCGTCCGTGTTTTGTTCAAACTATACAAGGAAGAGAT
GGATGACCCTAATGTAAAGAGATAGCTCTCGAGCCCTAGATTAAGAGAAA
GAAACATGGCTGCCCTGCCACGGGCGTTGCATGGCTGTGCTGTCCGCAGA
GGTGTAGATGCATGGGCGAATGTTGATGCACACTCAAATACATCCCCACA
GGAATTCAGACAAGCAAGGAGGAGGCATGAGGAGCTGTGGGGCTGTAGGA
AAAATCTCTAAAGTCATGTGGGTTGGTTTTGGTTTTGAGACAAGGTCTCA
CTTTAAAGCTCAGCCTGGGCTAGCTTCAAACTCAAGATCTTTGTGCTTCA
GGCTCCCAAGTGCCTGGACTACGACATGGGCCACCACACCTAGCTAACCT
TTTTAATGTTGTCTATTGAATGCTGCTATTGTTCTCTTGCATTTTGNCTT
GNGNANNACGTGGCATTGGTAGGGATCAAACCCAGGGTGTGGGGCCTGCT
GGGCAAGCCTAACATTGACTTTATCCCCGGCCCGAATCTTTTGTTTTGAT
TGCCCAAAAAAGAAATTTTTTTCCGCCCCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_f20.b1 MSMg01no339_f20.b1 CHROMAT_FILE:
MSMg01no339_f20.b1 PHD_FILE: MSMg01no339_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:10 2005
         (579 letters)



>mm_chr13_47023350_47024328
          Length = 979

 Score = 1112 bits (575), Expect = 0.0
 Identities = 578/579 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaatctgacccccaaaattagcaaggctgggctgcagtggggtatgattatagaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaatctgacccccaaaattagcaaggctgggctgcagtggggtatgattatagaagga 260

                                                                       
Query: 61  agcagctgcctcgcttagcaataaagtaacaaaccctactcacaattgggtttcagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagctgcctcgcttagcaataaagtaacaaaccctactcacaattgggtttcagggaa 320

                                                                       
Query: 121 actttaaagagcaaaaatccactcattatggagctcatcaaccaacaggtgactttcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttaaagagcaaaaatccactcattatggagctcatcaaccaacaggtgactttcagg 380

                                                                       
Query: 181 gtcaaactcgtactcatttccaagccgaatcggaatcccggttttcttttctatttttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaaactcgtactcatttccaagccgaatcggaatcccggttttcttttctatttttat 440

                                                                       
Query: 241 aaggtcctactatgccataacgaatgaatcccaaccaatttcttctcaggggcttaccat 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtcctacaatgccataacgaatgaatcccaaccaatttcttctcaggggcttaccat 500

                                                                       
Query: 301 aaaaatgccaaatattcacactattttagggcgttttcccataccattgcatggaacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaatgccaaatattcacactattttagggcgttttcccataccattgcatggaacaca 560

                                                                       
Query: 361 gtagaattaataaggatcccacagtcaggacttttcaaatgcaaatgccttgccatctag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtagaattaataaggatcccacagtcaggacttttcaaatgcaaatgccttgccatctag 620

                                                                       
Query: 421 aaaatgcagccccttttaacattcccccatcccagtgtctaaacagctccgtatcagcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaatgcagccccttttaacattcccccatcccagtgtctaaacagctccgtatcagcac 680

                                                                       
Query: 481 tctgtctgtttcctcgaaaatcaaaattcccgaattactttcagacaccatctcaactca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgtctgtttcctcgaaaatcaaaattcccgaattactttcagacaccatctcaactca 740

                                                  
Query: 541 ccacctccaacaacctacatacagattttaaatgaccct 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccacctccaacaacctacatacagattttaaatgaccct 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_f20.g1 MSMg01no339_f20.g1 CHROMAT_FILE:
MSMg01no339_f20.g1 PHD_FILE: MSMg01no339_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:11 2005
         (469 letters)



>mm_chr13_47123608_47124476
          Length = 869

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttccctgacttatctcacgggaagcacactgcttatgtgcatgaagataattctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttttccctgacttatctcacgggaagcacactgcttatgtgcatgaagataattctggg 518

                                                                       
Query: 61  ctaatgagaacagtggactcttccacaccatccaggttttcttacactccgtccgtgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctaatgagaacagtggactcttccacaccatccaggttttcttacactccgtccgtgttt 458

                                                                       
Query: 121 tgttcaaactatacaaggaagagatggatgaccctaatgtaaagagatagctctcgagcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 457 tgttcaaactatacaaggaagagatggatgaccctaatgtaaagagatagctcttgagcc 398

                                                                       
Query: 181 ctagattaagagaaagaaacatggctgccctgccacgggcgttgcatggctgtgctgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctagattaagagaaagaaacatggctgccctgccacgggcgttgcatggctgtgctgtcc 338

                                                                       
Query: 241 gcagaggtgtagatgcatgggcgaatgttgatgcacactcaaatacatccccacaggaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcagaggtgtagatgcatgggcgaatgttgatgcacactcaaatacatccccacaggaat 278

                                                                       
Query: 301 tcagacaagcaaggaggaggcatgaggagctgtggggctgtaggaaaaatctctaaagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcagacaagcaaggaggaggcatgaggagctgtggggctgtaggaaaaatctctaaagtc 218

                                                                       
Query: 361 atgtgggttggttttggttttgagacaaggtctcactttaaagctcagcctgggctagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 atgtgggttggttttggttttgagacaaggtctcactttaaagctcagcctgggctagct 158

                                                         
Query: 421 tcaaactcaagatctttgtgcttcaggctcccaagtgcctggacta 466
           |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 157 tcaaactcaagatccttgtgctacaggctcccaagtgcctggacta 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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