Query= MSMg01no339_g18.b1 MSMg01no339_g18.b1 CHROMAT_FILE:
MSMg01no339_g18.b1 PHD_FILE: MSMg01no339_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:15 2005
(485 letters)
>mm_chr13_16728247_16729130
Length = 884
Score = 822 bits (425), Expect = 0.0
Identities = 464/483 (96%), Gaps = 12/483 (2%)
Strand = Plus / Plus
Query: 5 ggaattcacatttg--ttctctaaatttaatgcctttacaatagcacaaagtgacaactt 62
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcacatttgagtg---taaatttaatgcctttacaatagcacaaagtgacaactt 261
Query: 63 gcaagtttctttgtaccatgagctcattgatgtagtttcattaatacgaaccttggataa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gcaagtttctttgtaccatgagctcattgatgtagtttcattaatacgaaccttggataa 321
Query: 123 actggtatagatgacatttgcctatgaaatttgtaacttcttttcctgtctcgagacttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 actggtatagatgacatttgcctatgaaatttgtaacttcttttcctgtctcgagacttg 381
Query: 183 gtgcagctggcatgccttctggcctagagaacacctgtgcacaccaccctccctttcact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgcagctggcatgccttctggcctagagaacacctgtgcacaccaccctccctttcact 441
Query: 243 tgtcccatacatacttgcagccttaggaaatgtctgattttagttttcatcttgtatgaa 302
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 442 tgtcccatacatacttgcagccttaagaaatgtctgatttcagttttcatcttgtatgaa 501
Query: 303 tataggtctagctgttactcatattgtggaggcaaaattgattgattggtctcctactta 362
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tataggtctagctgttactcctattgtggaggcaaaattgattgattggtctcctactta 561
Query: 363 aagtatttcaggcatcactgaaggtgggagaggaggcagagggctttcccagtgacctag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aagtatttcaggcatcactgaaggtgggagaggaggcagagggctttcccagtgacctag 621
Query: 423 ggatgaggacttgtatgacagaaacgcacatagtccaaggtaagggaagaatctgaacca 482
|| ||||| ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 622 gggtgaggccttgtatgacagaaacgcaca-------aggtaggggaagaatctgaacca 674
Query: 483 aac 485
|||
Sbjct: 675 aac 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space: 415150
Effective search space used: 415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_g18.g1 MSMg01no339_g18.g1 CHROMAT_FILE:
MSMg01no339_g18.g1 PHD_FILE: MSMg01no339_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:15 2005
(386 letters)
>mm_chr13_16908581_16909366
Length = 786
Score = 692 bits (358), Expect = 0.0
Identities = 379/386 (98%)
Strand = Plus / Minus
Query: 1 atctgtgggaaatgcctatagagctttgccttttgatccaatgtgtgattataaaatctg 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 586 atctgtgggaaatgcctatagagctttgccttttgatccaacatgtgattataaaatctg 527
Query: 61 gcagctttgttagctgctcctactgaagggctccttcagggacctgctcgtgccacttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 526 gcagctttgttagctgctcctactgaagggctccttcagggacctgctcgtgccactcgt 467
Query: 121 tagatccttgacttgaatttgacagtctaattcactaactgacttttcattttccttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tagatccttgacttgaatttgacagtctaattcactaactgacttttcattttccttgct 407
Query: 181 ggaacctgtcctaacctgaatgacattcagagctggagcactcaaattcagtccagctgt 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 406 ggaacctgtcctaacctgaatgacatccagagctggagcactcaaattcagtccagctgt 347
Query: 241 cagtacatgaacttggttgtgagtttgccacctactcccctctgtttcattttcaaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cagtacatgaacttggttgtgagtttgccacctactcccctctgtttcattttcaaaatc 287
Query: 301 aaaaaacgctttcctgaggcctgccagcccacaaagtaagagtctttaaaaggtttgttg 360
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 286 aaaaaacgctttcctgaggcctgccagcccacaaagtacgagtctttagaaggtttgttg 227
Query: 361 gatacacgtgatgagattgagtcgtg 386
||||||||||||||||| ||||||||
Sbjct: 226 gatacacgtgatgagatggagtcgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
