Query= MSMg01no339_i06.b1 MSMg01no339_i06.b1 CHROMAT_FILE:
MSMg01no339_i06.b1 PHD_FILE: MSMg01no339_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:22 2005
(573 letters)
>mm_chr13_110844280_110845252
Length = 973
Score = 1038 bits (537), Expect = 0.0
Identities = 561/569 (98%)
Strand = Plus / Plus
Query: 5 gaattcacacacatactaaatacctaacagagcacataccatttgtacacaatgaatttc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacacacaaactaaatacctaacagagcacataccatttgtacacaatgaatttc 264
Query: 65 aataataataataattaataataataataataatttcacaatgtgaatacactttatagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aataataataataattaataataataataataatttcacaatgtgaatacactttatagc 324
Query: 125 tttaaactcagacaagagcttctgtggacacaggaggagtcacaagacttgctatgcagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttaaactcagacaagagcttctgtggacacaggaggagtcacaagacttgctatgcagc 384
Query: 185 agtagttttcaactaaacatcacaatcacgataagaaagcattaaatattatctcaagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtagttttcaactaaacatcacaatcacgataagaaagcattaaatattatctcaagaa 444
Query: 245 gagttccacagtgccatccccagaaaggagcccaaagtaccctggcacaatgtagagtct 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 gagttccacagtgccatccccagaaaggagcccaaagaaccctggcacaatgtagagtct 504
Query: 305 ttctttgtgcattgtccaatgcccttaaacaaaacccggagctacagaaaaatttgagta 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 ttctttgtgcattgtccgatgcccttaaacaaaacccggagctacagaaaaatctgagta 564
Query: 365 gagctctgcctggtgatgtgggattaggcaataacgccttgtggtttgggtcactggcaa 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagctctgcctggtgatgtgggattaggcaataacgccttgtggtttgggtcactggcaa 624
Query: 425 atgtctacgttaactgcttgaaagcagtccgtgttttgtggccgacctgaggctgcttag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgtctacgttaactgcttgaaagcagtccgtgttttgtggccgacctgaggctgcttag 684
Query: 485 ctcaggggaacacaatgaatgaagtagcagcttgccttctccgcctagattggaatgcag 544
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 685 ctcaggggaacacaatgaatgacttagcagcttgccttctccgcctagatcggaatgcag 744
Query: 545 agagctaagctgggcaactgtgggtttca 573
|||||||||||||||||||||||||||||
Sbjct: 745 agagctaagctgggcaactgtgggtttca 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_i06.g1 MSMg01no339_i06.g1 CHROMAT_FILE:
MSMg01no339_i06.g1 PHD_FILE: MSMg01no339_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:22 2005
(502 letters)
>mm_chr13_111039328_111040229
Length = 902
Score = 727 bits (376), Expect = 0.0
Identities = 471/520 (90%), Gaps = 31/520 (5%)
Strand = Plus / Minus
Query: 3 ttctagacttacgtggatccaaattcccctaaaacagtagcatcatgtaatcattttgtg 62
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 902 ttctagacttacatggatccaaattcccctaaaacagtagtatcatgtagtcattttgtg 843
Query: 63 atgacggatattcttcaaaaccagctctcagagtctttaaatctttgtttcgttaatttt 122
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct: 842 atgacggatattcttcaaaaccagctctcagagtctttacatattggtttcgttaatttt 783
Query: 123 gacaacttaatcaactttctcatacctcagttttcccaactgtaaaagggggacaacatt 182
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gacaagttaatcagctttctcatacctcagttttcccaactgtaaaagggggacaacatt 723
Query: 183 aattctttgggcataatcttactgtcaaggaaaagtagaatattt-----g--------- 228
|| |||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 722 aactctttgggtataatcttactgtcaaggaaaagtagaatatttataaagttcttatca 663
Query: 229 ---ta--------aagttctcaattttaaaaagtcattattccttatagcctttatctta 277
|| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 taatactgatcgtaagttctcaattttaaaaagtcattattccttatagcctttatctta 603
Query: 278 acatcatgaatgtcatgcaccatcttattttctaggccagacatttccaggtctaaagca 337
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 602 acatcatgaatgtcatgcaccaacttattttctaggccagacatttccaggtctaaagca 543
Query: 338 tacagacatttacacgaagtagtttgattttgatgttctgatatataataagacaaaaaa 397
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 542 tacagacatttacatgaagtagtttgattttgatgttctggtatataataagacgaaaaa 483
Query: 398 gatataaagataatgatgagcaaaacacctccaggacagtggtgtgttctgtctctgtct 457
||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 482 gatgtaaagataatgatgagcaaaacatctccaggacagtggtatgttctgtctctgtct 423
Query: 458 ttgtctctgtct--ctctct----cttcccctgcccccct 491
|||||||||||| |||||| ||||||| ||||||||
Sbjct: 422 ttgtctctgtctttctctctttctcttcccccgcccccct 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
