BAC Information

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BAC

Clone NameMSMg01-339I16
Chromosome13 (Build37)
Map Location 34,096,215 - 34,231,174
singlet/doubletdoublet
Overlap geneRipk1, Bphl, Tubb2a, LOC100042686, Tubb2b
Upstream geneSerpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik
Downstream gene2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339I16.T7 (MSMg01no339_i16.b1)MSMg01-339I16.TJ (MSMg01no339_i16.g1)
ACCAG453802AG453803
length751742
length of high quality
(start - end)		573 (68 - 640)530 (60 - 589)
definitionCHROMAT_FILE: MSMg01no339_i16.b1 PHD_FILE: MSMg01no339_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:24 2005CHROMAT_FILE: MSMg01no339_i16.g1 PHD_FILE: MSMg01no339_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(34,096,215 - 34,096,787)(34,230,874 - 34,231,174)
sequence
TCTTCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTCGTGTCGATCATTTAACCTCAACTTGTAATTTCTTTATTTG
TAAATTGAAAATAGTCTTGATAAATTAATTCACAGACCACAATGTGCTGA
TGTGTTTGATCATACTTTGTTAAATTTTATTCCACCTTGTCTTTTGTTGG
TGGTTTGATTCCTTGTTCAATGCCCTTTTGTGAAACAAGCACAGGCTGTT
TTAATTAAAGAACCTTGGATGCAGCGAGCCACTGATATGTCACTTACCTG
AGTAAAATCAGAATTCTTCTAATAAGGAAGTAGGGCACAGCTAGCAGTTG
ACATTCTTTGTCCTCCTGCTCTTATTATACATGATAGTCACTGAAAATTT
AAGTGAAAATTAGTTGGGTTTTAAAAGGAGTACAGCCATTAAAAGGGATA
TGTACACACGAATATACAACTTTTTTTTCTAAAACAAGGTCTCGCTATAT
AGCCCTGACTGGTCTGGAACTCACTAAGTAAGCGTGAACTTAAACAGTAT
TATATGTAAATATAATGTAGACTTATTTTGCCAGTGTTCATTTTGAAATT
TCTGATTCATTTCAGTGGAAAAAAATTAACTTTCCTGTGGNTCTGACTTA
ATAATCATTTATCTCAAAACATTAGCAAATTCCATTGAGACATGACATTA
GTTAAAGTTAGTTATCACTTTCTTATAACAGGTAAATATGACTTAGTTTA
G

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTATGTGCCACGATGACATTTACACGTGGCTGGCTAGAAGAC
AGCACTTTGAAAGCTTCCATTTTACAATGTCAACCAGATCTTTCCCCTTT
GTCCATTCAGGAGGGAACCAGTACGGTATAGATCAAATACGAGTCTATTT
TCTATTGATACGAGTGAATGTCACAGACTGGATATATCTTCATGAAAAGA
GGGTTATTGGGTTCATAGTTCTGAAGGCTGGGCAACCTAAAGCATGGTAC
AAGCATCTCTGTTCAACAGTAGACAAAGGCCTTGTGCTCTGTCTCACACA
CCAAGGACATCACATGGCAAGACAGAAAAAGAATGTCACCTCATGTCTCT
TCCTCTTCTTAAAAAGTCACCAATTTCATCGTGGGACTCCCACTCTCCCG
ACTGAACTTGGAGTCCTCCTCAGAGGATTCGTCTCCAAATAATTGTCAAC
AATTTGTGATCTAGACTTCCTGTGAGTCTTGGAAGGATGTTTAGCCTAAT
AGAATTGTGCTTGGTCCTGAGCCTGGAATCACAGCAGCTTGTGGGCATTA
TGAGCAAGTCTCAACTCCCAGTCTTTACTTCCTGGGGGTGCTGAACATGA
TAAAAACTGTGTCTGAGCAGAATACTTTATGAAAGATTAGGTCTGCGGTT
TTCTCTCTCCAGGGCGGCTTGGGTCTAATAGGTGTGCCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_i16.b1 MSMg01no339_i16.b1 CHROMAT_FILE:
MSMg01no339_i16.b1 PHD_FILE: MSMg01no339_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:24 2005
         (573 letters)



>mm_chr13_34096015_34096987
          Length = 973

 Score = 1085 bits (561), Expect = 0.0
 Identities = 570/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatttaacctcaacttgtaatttctttatttgtaaattgaaaatagtcttgataaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttaacctcaacttgtaatttctttatttgtaaattgaaaatagtcttgataaatta 260

                                                                       
Query: 61  attcacagaccacaatgtgctgatgtgtttgatcatactttgttaaattttattccacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcacagaccacaatgtgctgatgtgtttgatcatactttgttaaattttattccacct 320

                                                                       
Query: 121 tgtcttttgttggtggtttgattccttgttcaatgcccttttgtgaaacaagcacaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcttttgttggtggtttgattccttgttcaatgcccttttgtgaaacaagcacaggct 380

                                                                       
Query: 181 gttttaattaaagaaccttggatgcagcgagccactgatatgtcacttacctgagtaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttaattaaagaaccttggatgcagcgagccactgatatgtcacttacctgagtaaaa 440

                                                                       
Query: 241 tcagaattcttctaataaggaagtagggcacagctagcagttgacattctttgtcctcct 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagaattcttctaagaaggaagtagggcacagctagcagttgacattctttgtcctcct 500

                                                                       
Query: 301 gctcttattatacatgatagtcactgaaaatttaagtgaaaattagttgggttttaaaag 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcttattatacaagatagtcactgaaaatttaagtgaaaattagttgggttttaaaag 560

                                                                       
Query: 361 gagtacagccattaaaagggatatgtacacacgaatatacaacttttttttctaaaacaa 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagtgcagccattaaaagggatatgtacacacgaatatacaacttttttttctaaaacaa 620

                                                                       
Query: 421 ggtctcgctatatagccctgactggtctggaactcactaagtaagcgtgaacttaaacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtctcgctatatagccctgactggtctggaactcactaagtaagcgtgaacttaaacag 680

                                                                       
Query: 481 tattatatgtaaatataatgtagacttattttgccagtgttcattttgaaatttctgatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattatatgtaaatataatgtagacttattttgccagtgttcattttgaaatttctgatt 740

                                            
Query: 541 catttcagtggaaaaaaattaactttcctgtgg 573
           |||||||||||||||||||||||||||||||||
Sbjct: 741 catttcagtggaaaaaaattaactttcctgtgg 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_i16.g1 MSMg01no339_i16.g1 CHROMAT_FILE:
MSMg01no339_i16.g1 PHD_FILE: MSMg01no339_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:24 2005
         (530 letters)



>mm_chr13_34230445_34231374
          Length = 930

 Score =  543 bits (281), Expect = e-159
 Identities = 296/301 (98%)
 Strand = Plus / Minus

                                                                       
Query: 230 aaagcatggtacaagcatctctgttcaacagtagacaaaggccttgtgctctgtctcaca 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aaagcatggtacaagcatctctgttcaacagtagacaaaggccttgtgctctgtctcaca 671

                                                                       
Query: 290 caccaaggacatcacatggcaagacagaaaaagaatgtcacctcatgtctcttcctcttc 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 caccaaggacatcacatggcaagacagaaaaagaatgtcacctcatgtctcttcctcttc 611

                                                                       
Query: 350 ttaaaaagtcaccaatttcatcgtgggactcccactctcccgactgaacttggagtcctc 409
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 610 ttaaaaagtcaccaatttcatcgtgggactcccactctcccaactgaacttggagtcctc 551

                                                                       
Query: 410 ctcagaggattcgtctccaaataattgtcaacaatttgtgatctagacttcctgtgagtc 469
           |||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct: 550 ctcagaggattcgtctccaaataattgtcatctatttgtgatctagtcttcctgtgagtc 491

                                                                       
Query: 470 ttggaaggatgtttagcctaatagaattgtgcttggtcctgagcctggaatcacagcagc 529
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 490 ttggaaggatgtttagcctaatagcattgtgcttggtcctgagcctggaatcacagcagc 431

            
Query: 530 t 530
           |
Sbjct: 430 t 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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