BAC Information

Click to search

BAC

Clone NameMSMg01-339K13
Chromosome13 (Build37)
Map Location 61,857,324 - 61,857,875
singlet/doubletsinglet
Overlap genenone
Upstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332
Downstream geneBC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339K13.T7 (MSMg01no339_k13.b1)MSMg01-339K13.TJ (MSMg01no339_k13.g1)
ACCAG453889AG453890
length739744
length of high quality
(start - end)		509 (84 - 592)550 (78 - 627)
definitionCHROMAT_FILE: MSMg01no339_k13.b1 PHD_FILE: MSMg01no339_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:33 2005CHROMAT_FILE: MSMg01no339_k13.g1 PHD_FILE: MSMg01no339_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:33 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAAAATATCTCGAAAATTTCTAANAAGAGTTGTGTTTTCTCTCCATA
GATTTTCCAAACAATATCAGAAATTCCCACTGAAAAATTTTTTTCAAGAA
CTGTTTAGGTTTTCGAGATATGTCCAGACTGCAGACTGCTCAGGTCTAGC
TAAAGGAAAAAAAAAAATTTAAATAGGAAGTGCTGCAGCTTTTTGCTAGT
TGATCTAAAGCAGACCAAAAGCCAAGGTTTTAATTTACACGTCAATTTAA
TTCTTTATTGTAGGGTCGCTTTTGATTATCCTATGAATCAGCATCCATTG
TCACCAGAACCTTGACAACAAGCACACTATTTTTTTTTTTAAGCACTGCA
AAAGAATTCAGAGGTCTGTCTTCAGAGCATAAATTTTAGCTGGGTGAGAC
CTGGGTGAGACCTGGGCACTGGACTGGAAGCACTGGACTCGAAGCTGTTC
ATCCCTAATCCATGGATCTTTTGTAAATGCCTCATGTATGTAGCCTTACA
GTGACTTCTGTTTGAGGTTCAGGTTCCTCAGACCAAAAACAAAACAAAAC
TAAACAAAAACGAAAAACAAATCAAAACAAAAAACAAAGAACTTGATGTC
ATTCAGAGTCACCACCACTCCAGGCTCCTAAGTACTTCAAGAAAGCAGAA
TATGATCCTATTCAGACCAATCAATCTTCCGGCTTGGCT

NCCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTGGACTGAGAAGTGGGAGA
TGAGGTGGTGACTCTCCCCTGGGCGTAGTAAAAACCAGCAGCCTTCTGTC
AGGTTCCTAATAACTTTTTTATGGGCTGGATCTACAAAAACATTTGGAAC
ATGGGATTTCCTGTAGAAACATCCTTTTAAAAAATGTTTTATTTCTAATT
CATTTTTTACACTCCATATTCCATTCCCCGCCCTTCCCCATCCATCTTCG
GAGTGCTCCACATCCTACACTTCCTCCCCACCCCACCCCATCTACATGTG
GATGCTTCCATCTCCAACTCCACCTGAACTCTAAACACCTAGTCTCTTGA
AGGTTAGGTGTATCATCTCGGAATGAACACAGAACCGGAAGTCCTCTACT
GTATGCGTATTGGGGGCCTCATATCAGCTGATATATGTTGTCTGTTTGGT
GGTCCAGTGTTTGAAAGATCTCGGGGGTCCAGATAAATTGAAACTGCTGA
TCCTCCTACAGGATCGCCCTTCTCCTCAAGATCTTTCAGCCTTCCCTTAT
TCAACAACAGGGGTCAGCTGCTTCTGTCCCTTGCTTGGGTATAAATAGCT
GCATCTGACCCTTTCACCTGCTTGTTGGGGCTTTCAGGGGTCATTCATGA
TCTCCTTTTGGGAGCTTTACTCCTTTTTTTAAGCTTTACATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_k13.g1 MSMg01no339_k13.g1 CHROMAT_FILE:
MSMg01no339_k13.g1 PHD_FILE: MSMg01no339_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:33 2005
         (550 letters)



>mm_chr13_61857124_61858075
          Length = 952

 Score =  934 bits (483), Expect = 0.0
 Identities = 535/553 (96%), Gaps = 4/553 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagtggactgagaagtgggagatgaggtggtgactctcccctgggcgtagtaaaaacca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 201 ctagtggactgagaagtgggagatgaggtggtgactctcccctgggcggagtagaaacca 260

                                                                       
Query: 61  gcagccttctgtcaggttcctaataactttttta--tgggctggatctacaaaaacattt 118
           ||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||
Sbjct: 261 gcagccttctgtcaggttcctaataacttttttatttgagctggatctacaaaaacattt 320

                                                                       
Query: 119 ggaacatgggatttcctgtagaaacatccttttaaaaaatgttttatttctaattcattt 178
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 321 ggaatacgggatttcctgtagaaacatccttttaaaaaatgttttatttctaattaaatt 380

                                                                       
Query: 179 tttacactccatattccattccccgcccttccccatccatcttcggagtgctccacatcc 238
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tttacactccatattccattccccgcccttccccatccatcttctgagtgctccacatcc 440

                                                                       
Query: 239 tacacttcctccccaccccaccccatctacatgtggatgcttccatctccaactccacct 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacacttcctccccaccccaccccatctacatgtggatgcttccatctccaactccacct 500

                                                                       
Query: 299 gaactctaaacacctagtctcttgaaggttaggtgtatcatctcggaatgaacacagaac 358
           |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaactctgtacacctagcctcttgaaggttaggtgtatcatctcggaatgaacacagaac 560

                                                                       
Query: 359 cggaagtcctctactgtatgcgtattgggggcctcatatcagctgatatatgttgtctgt 418
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggaagtcctctactgtatgcgtgttgggggcctcatatcagctgatatatgttgtctgt 620

                                                                       
Query: 419 ttggtggtccagtgtttgaaagatctcgggggtccagat-aaattgaaactgctgatcct 477
           ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 621 ttggtggtccagtgtttgaaagatctcgggggtccagattaaat-gagactgctgatcct 679

                                                                       
Query: 478 cctacaggatcgcccttctcctcaagatctttcagccttcccttattcaacaacaggggt 537
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 680 cctacaggatcgcccttctcctcaagttctttcagccttcccttattcaacaacaggggt 739

                        
Query: 538 cagctgcttctgt 550
           |||||||||||||
Sbjct: 740 cagctgcttctgt 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 952
Length adjustment: 10
Effective length of query: 540
Effective length of database: 942
Effective search space:   508680
Effective search space used:   508680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |