BAC Information

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BAC

Clone NameMSMg01-339L13
Chromosome13 (Build37)
Map Location 28,264,415 - 28,264,740
singlet/doubletsinglet
Overlap genenone
Upstream genePrl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1
Downstream geneLOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339L13.T7 (MSMg01no339_l13.b1)MSMg01-339L13.TJ (MSMg01no339_l13.g1)
ACCAG453936AG453937
length756733
length of high quality
(start - end)
222 (195 - 416)393 (58 - 450)
definitionCHROMAT_FILE: MSMg01no339_l13.b1 PHD_FILE: MSMg01no339_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:37 2005CHROMAT_FILE: MSMg01no339_l13.g1 PHD_FILE: MSMg01no339_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGAACTCTCATGCGCAAGTATGTCTGTAATTTAGAGCTTTTTC
CACAAATCCCCTAACAGGGTCATTTATAGCTCTAATTTAGTTTCTTGGAT
GAGATTGAATATAATTTCCTCAGGAGCTAGAATAGTTTATGTTCCTACCA
ATAGTGTATAATTGTTACATTTTATTCAAATTTTTGCCAGCATTTGCTGA
ATTTTCTTGATGATTGCAATTCTGACTGCAGAGAGAAAGAACATGATATA
AGTTTTTGGTTTTGTTCTTTTTTATTTTGGTTTGGGGTTTTTTTGTTGTT
GTTGTTCTGTTTTGTTTTTTGTTTTTTGAGACAGGGTTTCTCTATATAAC
CCTGGCTGTCCTGAAACTTAATCTGTAGACCAGGATGTCCTCAAACTCAA
AAATCTGTCTGCCTCTGCCTCACAAATGCTGGTATTATTGCCTACCCCAC
CTATATAGGTCTAATACAGTTTAATTTGCATATTTCATTATTATTGTGAT
TTTTGACCTTTCCCTATGTTGTTTATTGTAATTTTAATCTTCGTCACTTG
AGAACCTATTTTCTTCTTCTATTAATTCCACTTCCATTTTGGTTTGTTTA
TTACTATGACGCTCTCCTTCCGGTTTTGCCCCCAATCCCCCTCCTTTTTT
CCCCATCCCACGCTCTAGTTATTCCTCATTATCCCCGGAAACACTCTTTC
TTGTAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAGGCACATACCTAAACATAATAAAAGCAATCTACAGCAAACC
AATAGCCAACATATGGAGAGAAGCTGAATGCAATCCCACTAAAGTCAGGG
ACTAGACAAGACTGCCCACTTTCTCGCTACCTGGGAATGCCAGGACAGAA
ATGGGAATGGGTGGGCTAGTGAGCAGGTTGGAAGGATTGGATAGGGGAGG
TTTCAGGGGGGAAATGGGAAAAGGGGATATAATTTGTAATGTAATAAAAG
AAAACAGCTAATTAAAAAAAAAAAGGAAATTTGGGACTATGAAACTGTCC
CTTTTCCTTATTCACATTTAATGATAGTGCTTTTCATGTTCCTGAGTATT
ACTTGAGTTGATGCATGACACTTTCTTAATTAAGGTGTAATTGGTGTGAA
GTCACATCTCAGGAGAAAAAAAATAAGTTAAAATGAGTTACATACTTATC
CCTTGAAGGTTTCTGAAGATCATGTTTTGATGTGTTCAAATATAACTTAT
ATCAGGCCCAGTGTACATTTGGAGCCTCCCTTTACAAATTACCCATGGGA
GGAGGGATCTCTGTGAAGGAACCAATCGGCACAGTTCAGAAGGCTTTCGT
TAATTTTTTAATTAATCTTTTTAACTACCCAACCACTCCCATCTTATTTC
CTCCCCCCCCCATCCTTATTGAATTCATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_l13.g1 MSMg01no339_l13.g1 CHROMAT_FILE:
MSMg01no339_l13.g1 PHD_FILE: MSMg01no339_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:38 2005
         (393 letters)



>mm_chr13_28263948_28264740
          Length = 793

 Score =  625 bits (323), Expect = 0.0
 Identities = 326/327 (99%), Gaps = 1/327 (0%)
 Strand = Plus / Minus

                                                                       
Query: 67  ctgaatgcaatcccactaaagtcagggactagacaagactgcccactttctcgctacctg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ctgaatgcaatcccactaaagtcagggactagacaagactgcccactttctcgctacctg 734

                                                                       
Query: 127 ggaatgccaggacagaaatgggaatgggtgggctagtgagcaggttggaaggattggata 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggaatgccaggacagaaatgggaatgggtgggctagtgagcaggttggaaggattggata 674

                                                                       
Query: 187 ggggaggtttcaggggggaaatgggaaaaggggatataatttgtaatgtaataaaagaaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ggggaggtttcaggggggaaatgggaaaaggggatataatttgtaatgtaataaaagaaa 614

                                                                       
Query: 247 acagctaattaaaaaaaaaaaggaaatttgggactatgaaactgtcccttttccttattc 306
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acagctaattaaaaaaaaaa-ggaaatttgggactatgaaactgtcccttttccttattc 555

                                                                       
Query: 307 acatttaatgatagtgcttttcatgttcctgagtattacttgagttgatgcatgacactt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acatttaatgatagtgcttttcatgttcctgagtattacttgagttgatgcatgacactt 495

                                      
Query: 367 tcttaattaaggtgtaattggtgtgaa 393
           |||||||||||||||||||||||||||
Sbjct: 494 tcttaattaaggtgtaattggtgtgaa 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)