Query= MSMg01no340_g10.b1 MSMg01no340_g10.b1 CHROMAT_FILE:
MSMg01no340_g10.b1 PHD_FILE: MSMg01no340_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:24 2005
(544 letters)
>mm_chr13_56723512_56724455
Length = 944
Score = 1029 bits (532), Expect = 0.0
Identities = 538/540 (99%)
Strand = Plus / Plus
Query: 5 gaattcacaagacccacacaccatagctatacagccagcagcctcctcagcacacacccc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaagacccagacaccatagctatacagccagcagcctcctcagcacacacccc 264
Query: 65 tacccccagagccacatttcttcctaggctgcctgcctcttttctgatgatgtcatccct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacccccagagccacatttcttcctaggctgcctgcctcttttctgatgatgtcatccct 324
Query: 125 gcaagaacaagactgcaagtctcttgtatgagaaggaaagggggagaccgaccaggtttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaagaacaagactgcaagtctcttgtatgagaaggaaagggggagaccgaccaggtttt 384
Query: 185 tttgcatttggctccaggccttgggggaggggcgggggatggggaggcagtggaggacca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgcatttggctccaggccttgggggaggggcgggggatggggaggcagtggaggacca 444
Query: 245 tgctcacccgtgggcagactccaggctccaggctccttttgcttcaatgttatctgaaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgctcacccgtgggcagactccaggctccaggctccttttgcttcaatgttatctgaaac 504
Query: 305 atctgacttggaggcttccacagtgttccaggctgactgacgtttgttttatgatgtcca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctgacttggaggcttccacagtgttccaggctgactgacgtttgttttatgatgtcca 564
Query: 365 gacggtgtcccatgataggctccttggaagaacgggagcagacaatctttagtttctcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacggtgtcccatgataggctccttggaagaacgggagcagacaatctttagtttctcaa 624
Query: 425 caaatgatctttaaaatgtcctgcacatcttgtgttcgtccaaatgcagaggcggcattg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaatgatctttaaaatgtcctgcacatcttgtgttcgtccaaatgcagaggcggcattg 684
Query: 485 gctgcccccctgccccccctccagaaggaccatggggaggttgaagatgagggaggatgg 544
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 685 gctgcccccctgccccccctccagaaggacaatggggaggttgaagatgagggaggatgg 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_g10.g1 MSMg01no340_g10.g1 CHROMAT_FILE:
MSMg01no340_g10.g1 PHD_FILE: MSMg01no340_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:24 2005
(524 letters)
>mm_chr13_56856166_56857090
Length = 925
Score = 395 bits (204), Expect = e-114
Identities = 213/216 (98%), Gaps = 1/216 (0%)
Strand = Plus / Minus
Query: 1 cgtctgagcaatgggcagccagtcactggggttctatgcaaactggcaacacctgggggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cgtctgagcaatgggcagccagtcactggggttctatgcaaactggcaacacctgggggc 267
Query: 61 agggcaggggggg-aagaaatggggatgcggcaggtgtgagggtctgagcaagagcagct 119
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 266 agggcagggggggaaagaaatggggatgtggcaggtgtgagggtctgagcaagagcagct 207
Query: 120 tagagaagcttccttcctggtcgcagttcttcactgagggacatcagggcaggagctcag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tagagaagcttccttcctggtcgcagttcttcactgagggacatcagggcaggagctcag 147
Query: 180 cctgcaggcaggaaggggaacaagagccaccgagga 215
||||||||||||||||||| ||||||||||||||||
Sbjct: 146 cctgcaggcaggaaggggagcaagagccaccgagga 111
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1 cgtctgagcaatgggcagccagtcactggggt 32
||||||||||||||||||||||||||||||||
Sbjct: 898 cgtctgagcaatgggcagccagtcactggggt 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space: 470310
Effective search space used: 470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
