BAC Information

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BAC

Clone NameMSMg01-341C23
Chromosome13 (Build37)
Map Location 101,643,250 - 101,809,877
singlet/doubletdoublet
Overlap geneLOC619865, LOC619917, EG619937
Upstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341C23.T7 (MSMg01no341_c23.b1)MSMg01-341C23.TJ (MSMg01no341_c23.g1)
ACCAG455043AG455044
length779794
length of high quality
(start - end)		483 (63 - 545)414 (70 - 483)
definitionCHROMAT_FILE: MSMg01no341_c23.b1 PHD_FILE: MSMg01no341_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:22 2005CHROMAT_FILE: MSMg01no341_c23.g1 PHD_FILE: MSMg01no341_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,643,250 - 101,643,732)(101,809,468 - 101,809,877)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGATCCGCGGAATTCTCTTA
TATGATAACCTCTGCAAAGCAGATGGGTTCAGAACAGGAGTATTAGGTAA
TGAAAATGTTCTTTTGGTATATATACTTTCTGCTTTAAAAGTATTAGTAT
GCAAGGCACTGCGACAGGAACCGAAAAGAAGAAGTAAGCCTAGATAATAT
TTTAAATCTGTATATGCTCTGTTCTTTCTGAAATAGACCCCATGGAAGTG
GCAAATACTGTCCTCATTCTGCCGATGAGAACACACTTCCAAGAAAGAGT
AATGGAGAACACACAGGGTGATTTATAAAATACAGCATACGCACGCTTTT
GTCTTTGTCTTTCTCTCTCTGTGTTTTGACTCCCGGAATTGAAGACTTGA
GAACTGGCACTTTGGAGGGAAGCCTTGAAAGAGATGTCCCACTAGGACCT
GGAGGACCCAGTTGCTCTTGACACCGCCCACTTCCGCTTCCTGATCATGT
GGTTGACTTGAGTTAGTCAGGCCATCGAGAATGAGCGACTCCAGAGCTGA
CTACAGAAAGGCAGGCAGAGAAAGGGCTACGTTTTAGCTCACGCTGGAGA
ATCAGGCAGGTGGTAACAAGAGATGACCAACCCGAAAGTTACCAGGTGGA
CCCATTAGGAAGAATTAAATTCAGGCTATAACCCCAAAAAAACCCACGGG
AGGTGGTTTTTTTTTTAAAAAACCCTTCCCCCTTATTTTTTTTTTTTTTT
TGTGGAGGCCCGGGTTCTTCACTCAACGG

TAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCCCCAGACTGGCACTTCTGAGTCAGCCAT
CCTCATGGATGGAGCAGCTACTAGACTCTCTTAGTCCGCCATTGTTGAAC
CACCTAAACTGCATTGTGTTAGCCAAAAAAACAGTCCTCTCACTATATAT
TTATCTATTTATCTGCTCCTCCAGAGAGACGTGACTAATACAATATCTAA
CATAAAGGAGGCACGTGATATTCACCTTGCTCTCCGCATCCTGTACACTT
TGAATTCTTTAAGTTTGAAAAGAGAGAAAAGACAGACTGTCCCCTACTAT
GGAAACTGAAAGTGTTAGTCCTTCATCACAAGGGCATATCTGTGAAGCAT
AAGCTTCATCGGGCAGAAAACCATATTAGACTCAGTCCAGAAAGCTCTCT
CCTACTGAAAGCACTCATTCTTCATTTCGNTGTCTCTGTGATTATGCCTC
TCTTCTCTACTCTCCCTCTCGTGTGATGAANGCAGCAGCAGTAGCTACTA
GGCCAAACTTGTGTGGTCCTGAAACTTGATATGCATCCCACCTTAAAAAT
TCTAAACCCCAAATCTCCTAAGAATTAATTATTAAAACCCGCCATTGGCG
ATAATTGGGCTCCTTAAAAAAAAGCCCACGTCATACGGCAACCGAACGAT
AATTGGGGAAACTTGGCCCCCCCGAAAAAAAAAAATAAACTGGGGATGTA
AACCTTTAAAAACCCAAGGCAAAAGCCCTCAAACTTTTTCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_c23.b1 MSMg01no341_c23.b1 CHROMAT_FILE:
MSMg01no341_c23.b1 PHD_FILE: MSMg01no341_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:22 2005
         (483 letters)



>mm_chr13_101643050_101643932
          Length = 883

 Score =  926 bits (479), Expect = 0.0
 Identities = 482/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcaaagcagatgggttcagaacaggagtattaggtaatgaaaatgttcttttggtatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcaaagcagatgggttcagaacaggagtattaggtaatgaaaatgttcttttggtatat 260

                                                                       
Query: 61  atactttctgctttaaaagtattagtatgcaaggcactgcgacaggaaccgaaaagaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atactttctgctttaaaagtattagtatgcaaggcactgcgacaggaaccgaaaagaaga 320

                                                                       
Query: 121 agtaagcctagataatattttaaatctgtatatgctctgttctttctgaaatagacccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaagcctagataatattttaaatctgtatatgctctgttctttctgaaatagacccca 380

                                                                       
Query: 181 tggaagtggcaaatactgtcctcattctgccgatgagaacacacttccaagaaagagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaagtggcaaatactgtcctcattctgccgatgagaacacacttccaagaaagagtaa 440

                                                                       
Query: 241 tggagaacacacagggtgatttataaaatacagcatacgcacgcttttgtctttgtcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggagaacacacagggtgatttataaaatacagcatacgcacgcttttgtctttgtcttt 500

                                                                       
Query: 301 ctctctctgtgttttgactcccggaattgaagacttgagaactggcactttggagggaag 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ctctctctgtgttttgactcccggaattgaagacttaagaactggcactttggagggaag 560

                                                                       
Query: 361 ccttgaaagagatgtcccactaggacctggaggacccagttgctcttgacaccgcccact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttgaaagagatgtcccactaggacctggaggacccagttgctcttgacaccgcccact 620

                                                                       
Query: 421 tccgcttcctgatcatgtggttgacttgagttagtcaggccatcgagaatgagcgactcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccgcttcctgatcatgtggttgacttgagttagtcaggccatcgagaatgagcgactcc 680

              
Query: 481 aga 483
           |||
Sbjct: 681 aga 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_c23.g1 MSMg01no341_c23.g1 CHROMAT_FILE:
MSMg01no341_c23.g1 PHD_FILE: MSMg01no341_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:22 2005
         (414 letters)



>mm_chr13_101809095_101809908
          Length = 814

 Score =  716 bits (370), Expect = 0.0
 Identities = 400/410 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccccagactggcacttctgagtcagccatcctcatggatggagcagctactagactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 agccccagactggcacttctgagtcagccatcctcatggatggagcagctactagactct 724

                                                                       
Query: 61  cttagtccgccattgttgaaccacctaaactgcattgtgttagccaaaaaaacagtcctc 120
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| 
Sbjct: 723 cttagtccgccattgttgaaccacctaaactgcattgtgttagccaatcaaacagtcctt 664

                                                                       
Query: 121 tcactatatatttatctatttatctgctcctccagagagacgtgactaatacaatatcta 180
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 663 tcactatatatttatctatttatctgctcctccagagcgacctgactaatacaatatcta 604

                                                                       
Query: 181 acataaaggaggcacgtgatattcaccttgctctccgcatcctgtacactttgaattctt 240
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 603 gcataaaggaggcacatgatattcaccttgctctccgcatcctgtacactttgaattctc 544

                                                                       
Query: 241 taagtttgaaaagagagaaaagacagactgtcccctactatggaaactgaaagtgttagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 taagtttgaaaagagagaaaagacagactgtcccctactatggaaactgaaagtgttagt 484

                                                                       
Query: 301 ccttcatcacaagggcatatctgtgaagcataagcttcatcgggcagaaaaccatattag 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 483 ccttcatcacaagggcatatctgtgaagcataagcttcatggggcagaaaaccatattag 424

                                                             
Query: 361 actcagtccagaaagctctctcctactgaaagcactcattcttcatttcg 410
           |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 423 actcagtccagaaagctctctcttactgaaagcactcattcttcatttcg 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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