BAC Information

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BAC

Clone NameMSMg01-341D12
Chromosome13 (Build37)
Map Location 72,948,079 - 73,108,341
singlet/doubletdoublet
Overlap genenone
Upstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
Downstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341D12.T7 (MSMg01no341_d12.b1)MSMg01-341D12.TJ (MSMg01no341_d12.g1)
ACCAG455069AG455070
length732776
length of high quality
(start - end)		188 (115 - 302)440 (74 - 513)
definitionCHROMAT_FILE: MSMg01no341_d12.b1 PHD_FILE: MSMg01no341_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:24 2005CHROMAT_FILE: MSMg01no341_d12.g1 PHD_FILE: MSMg01no341_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,108,156 - 73,108,341)(72,948,079 - 72,948,518)
sequence
AAATTTGCGGCCGCTAAAGATCACTTTCGAACGCGAGCCGCGGAANNCCC
TTTACTTAACGAGCGGCNNCAGNAGANGAGAGAGCCACATGGNGCGGGGG
CGTTTGGCCCGCGCGAAGAGGGAGCCCAATGCTATGCTATGTAGTTGTAG
AAACAATGAGTTCAGCTACTATTGAAAGCAGTGTAAAGGCTATCACCCAC
ATGACCCAACAATTTCACTGTAGTTGTGTATCCTATGTTTTATAGATGTG
TGTACCCATGTTCATTGCAATAATTTGTGTGTTAGTCCTGACAGGCACTA
ATTTTTTTTTTCTACCAGCAGACGAAGACGGGGCGCANANGCATTGTTTA
CTACCACCCATCTCTAATAGACTAAACATGGATGAAGCTTAGCTCATACT
GATTGAAGCATGCTGGCCATAGAAAGAGAGAAAAATAAAATAGTACCGCG
ATGGCAGGAAGTGAGATGGTCACTGGTAGGGCCTGGTTTGAGCTAGGAGA
CGATTACTGAGATGCTGGCACAATGTACGGAATTTCCTATTCCCCGCCCT
GCTCTCCCTTCAGTCGCTTAAGCCTGATCTCCGTCACTCTACGCGCTTCC
ACCCCATTTTCCCCCAGTCTGACCAACAGCCTTTTTTTTTTTTTTCTGGA
GCGACCCACCGCCCAGCCCATCCTTGTTTCCGCTTTTTATGCGCGTATTT
TTCTATAGCCCCTTTTTATCCCCTTCTTTCCT

ATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCAGCCCACTTCAGGTGCATCCAGA
AAATTCCAGAAAGTACACTTGGCCAAAAATACCACTGATTTTTCTTTGTA
AAAGTGCTCCTTGGGCTGTTATCCCTGGCTTACCTTGAGCTGTCATCTTA
GTGAGTGGTCCAGCCTCACCTTCTGGATTCTTTGCTCTCTGCTGGCCCAT
GACTGACCAGTGTAGGAGAGACACTCAGGTCTGTGAGAGGTTCAGGATAG
AGTCTCAGTCCTGACCCTTGCAGGTCATGGCTTGATGTGAGTGTTTGGAC
CCAGCCCTGAAACATTCTTTCCAGAATAGCAACATCCAGTGGAGACCCAG
TGTGTCTGCAAGAGCAACTTGGTTGTCCAATAGCGAATTTAAGAGCCACC
CTCCTCCAAAAAATTCTGGGCATAGTGGCATATGCTTGTAATCCAGTCTC
TGAAATGAAAGAGGCAGGCGACTCTACTGTGTCTCACTGGACATCCAGAC
TAGCTTAATCATGGGATATAGGCCAGAAAGAAACTCCTGCCTATAAAATG
GGGGGGTACACATGATATACACCCCCCGGACGCTGTAACTCTGGTTTCCC
CCCCAAAATTTCTTGAGCCTTTTTCCCCCCTTTCCTCCTATAAAATATAA
TTTAGCATTCCGGTTTTCCTCCCTTTTCGCTTTATTCCCGTTACACTTCC
CCTCTTTCCCTTTTATTCCTTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_d12.b1 MSMg01no341_d12.b1 CHROMAT_FILE:
MSMg01no341_d12.b1 PHD_FILE: MSMg01no341_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:24 2005
         (188 letters)



>mm_chr13_73107955_73108542
          Length = 588

 Score =  282 bits (146), Expect = 7e-81
 Identities = 176/186 (94%)
 Strand = Plus / Minus

                                                                       
Query: 2   aagagggagcccaatgctatgctatgtagttgtagaaacaatgagttcagctactattga 61
           |||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 387 aagagggatccctatgctatgctatgtagtaggagaaacaatgagttcagctactattga 328

                                                                       
Query: 62  aagcagtgtaaaggctatcacccacatgacccaacaatttcactgtagttgtgtatccta 121
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagcagtgtgaaggctatcacccacatgacccaacaatttcactgtagttgtgtatccta 268

                                                                       
Query: 122 tgttttatagatgtgtgtacccatgttcattgcaataatttgtgtgttagtcctgacagg 181
           |||   | ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 267 tgtcccagagatgtgtgtacccatgttcattgcaataatgtgtgtgttagtcctgacagg 208

                 
Query: 182 cactaa 187
           ||||||
Sbjct: 207 cactaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no341_d12.g1 MSMg01no341_d12.g1 CHROMAT_FILE:
MSMg01no341_d12.g1 PHD_FILE: MSMg01no341_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:24 2005
         (440 letters)



>mm_chr13_72947879_72948718
          Length = 840

 Score =  851 bits (440), Expect = 0.0
 Identities = 440/440 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcagcccacttcaggtgcatccagaaaattccagaaagtacacttggccaaaaatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcagcccacttcaggtgcatccagaaaattccagaaagtacacttggccaaaaatacc 260

                                                                       
Query: 61  actgatttttctttgtaaaagtgctccttgggctgttatccctggcttaccttgagctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgatttttctttgtaaaagtgctccttgggctgttatccctggcttaccttgagctgt 320

                                                                       
Query: 121 catcttagtgagtggtccagcctcaccttctggattctttgctctctgctggcccatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcttagtgagtggtccagcctcaccttctggattctttgctctctgctggcccatgac 380

                                                                       
Query: 181 tgaccagtgtaggagagacactcaggtctgtgagaggttcaggatagagtctcagtcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaccagtgtaggagagacactcaggtctgtgagaggttcaggatagagtctcagtcctg 440

                                                                       
Query: 241 acccttgcaggtcatggcttgatgtgagtgtttggacccagccctgaaacattctttcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acccttgcaggtcatggcttgatgtgagtgtttggacccagccctgaaacattctttcca 500

                                                                       
Query: 301 gaatagcaacatccagtggagacccagtgtgtctgcaagagcaacttggttgtccaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatagcaacatccagtggagacccagtgtgtctgcaagagcaacttggttgtccaatag 560

                                                                       
Query: 361 cgaatttaagagccaccctcctccaaaaaattctgggcatagtggcatatgcttgtaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgaatttaagagccaccctcctccaaaaaattctgggcatagtggcatatgcttgtaatc 620

                               
Query: 421 cagtctctgaaatgaaagag 440
           ||||||||||||||||||||
Sbjct: 621 cagtctctgaaatgaaagag 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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