BAC Information

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BAC

Clone NameMSMg01-341P06
Chromosome13 (Build37)
Map Location 85,932,314 - 86,153,256
singlet/doubletdoublet
Overlap geneLOC675662
Upstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
Downstream geneCox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341P06.T7 (MSMg01no341_p06.b1)MSMg01-341P06.TJ (MSMg01no341_p06.g1)
ACCAG455622AG455623
length766776
length of high quality
(start - end)		404 (43 - 446)314 (75 - 388)
definitionCHROMAT_FILE: MSMg01no341_p06.b1 PHD_FILE: MSMg01no341_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:20 2005CHROMAT_FILE: MSMg01no341_p06.g1 PHD_FILE: MSMg01no341_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,932,314 - 85,932,713)(86,152,943 - 86,153,256)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGACAGTTATAAACCGAAGCATCTGACAGACCAATGATTGTTGGGGCT
TAATAGTTAACTCCTATATCTTTTATTTATATTATTATCTATATCATATT
AAAATCTTTTATTTATATTATATCTTTTAAATAAAAGCTACAACTAAATA
TTCAGTTACATATGACCAATCTGCATGAGGTCAAATACGTGGTTAAACTA
GGAAAGAAACCTCAGATATATAAGCAGTTTCTATAAATTTTCTCCCTAGA
AATTTCCCATATTTTTATAGCATTTTAATTGTTATTGGTATAATTTTTTT
AAAAGATTACTCTGAGGCTCCTATAGTCTTCAAATGTGTTGTATGATCTT
TGTGTTTATTCACAAATGAGAACATATATTATTCTTAGGATAAATCATAG
GAACTCAAACACGCGTTTATATTTTTTTATCTACAAACATAAATAACATA
TGTTTAGGGCCTAAAATTATCTCTTTACAGCCACATACCCCAATATTGTC
ATTTTTAAGCCTAATATCCCCTTAATTGAATTCTAACATATGTTCCCATC
CTATTTCACTTTCCAAACCATATTGCACCACTTTTCATTGGTTTTTATAC
CCCCTTTTTCTATTTGTATATCCCTCCCACCACCGTTTTCTCTTGGTTTT
CCCTTTTTTTTTTCCCCATTTTTTTTTCTTCTTCCTCTCCTTTTTTTTTC
ATTTTTCTTATTTTTG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAAATAGAATTCAACATGAGAAAG
GAAAGAAGAAGTTAGTTTACTGGAAGAATGTGCCATTTGCACATGAATAC
AGATTATGTATTTGTGGACATGGGTTATTTGAAATGAGTTGTGGAAAGGG
GACATTGCAATTGGAGACACAACCAACGAAATGGGGACAGAAAATCTCGG
AGTATATTTGTGAAGTGGAAAATAACTCACTTACAAGAGCTACAAGGTCA
TATGTTATAAAAGATTCAGTAACAAATGCCAAGCAAAGTAGTTCAAGCGG
AACCCAGCAATAACGATTGAGCCCGTGAACAGGAAGCTTGTACACTTACA
GGTCTGCTTTAGTAAGATTAATCTGGTATTAATAGGCTGAATTGACTGGA
ATAGACAAAGCTAATGAGCAGTAATAAGGTTACTATGATCAGCCCTCAAA
AATTACCGTAAAAGCATTCCTCGTGCTGCCTCTTATTTTTCCTCCCCCCC
ACATTCTCTACTCCCCCCCTGGCTATGTCATTTTCATTCCCACTTTATCT
TTTTTTTTTTCTCCCTCTTCTTCCCCCCCCCCCCCTTTTTCTCTTCTTTT
TTTCCCCTTATTTCTTTCCTTCTTTCCCCCATTTTCCCCACTTTCTTTTT
CCTTTCCGCTTCCCATTTTTATCCTTCCGTTTTTTTCCCCTTTCCATTCC
CCTCCTCCCCTCTCTTCCCCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_p06.b1 MSMg01no341_p06.b1 CHROMAT_FILE:
MSMg01no341_p06.b1 PHD_FILE: MSMg01no341_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:20 2005
         (404 letters)



>mm_chr13_85932110_85932913
          Length = 804

 Score =  758 bits (392), Expect = 0.0
 Identities = 398/400 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagacagttataaaccgaagcatctgacagaccaatgattgttggggcttaatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagacagttataaaccgaagcatctgacagaccaatgattgttggggcttaatag 264

                                                                       
Query: 65  ttaactcctatatcttttatttatattattatctatatcatattaaaatcttttatttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaactcctatatcttttatttatattattatctatatcatattaaaatcttttatttat 324

                                                                       
Query: 125 attatatcttttaaataaaagctacaactaaatattcagttacatatgaccaatctgcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attatatcttttaaataaaagctacaactaaatattcagttacatatgaccaatctgcat 384

                                                                       
Query: 185 gaggtcaaatacgtggttaaactaggaaagaaacctcagatatataagcagtttctataa 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaggtcaactacgtggttaaactaggaaagaaacctcagatatataagcagtttctataa 444

                                                                       
Query: 245 attttctccctagaaatttcccatatttttatagcattttaattgttattggtataattt 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attttctccctagaaatttctcatatttttatagcattttaattgttattggtataattt 504

                                                                       
Query: 305 ttttaaaagattactctgaggctcctatagtcttcaaatgtgttgtatgatctttgtgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttaaaagattactctgaggctcctatagtcttcaaatgtgttgtatgatctttgtgtt 564

                                                   
Query: 365 tattcacaaatgagaacatatattattcttaggataaatc 404
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tattcacaaatgagaacatatattattcttaggataaatc 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_p06.g1 MSMg01no341_p06.g1 CHROMAT_FILE:
MSMg01no341_p06.g1 PHD_FILE: MSMg01no341_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:20 2005
         (314 letters)



>mm_chr13_86152743_86153456
          Length = 714

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaaatagaattcaacatgagaaaggaaagaagaagttagtttactggaagaatgtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 514 agaaaatagaattcaacatgagaaaggaaagaagaagttagtttactgggagaatgtgcc 455

                                                                       
Query: 61  atttgcacatgaatacagattatgtatttgtggacatgggttatttgaaatgagttgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atttgcacatgaatacagattatgtatttgtggacatgggttatttgaaatgagttgtgg 395

                                                                       
Query: 121 aaaggggacattgcaattggagacacaaccaacgaaatggggacagaaaatctcggagta 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaagtggacattgcaattggagacacaaccaacgaaatggggacagaaaatctcggagta 335

                                                                       
Query: 181 tatttgtgaagtggaaaataactcacttacaagagctacaaggtcatatgttataaaaga 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tatttgtgaagtagaaaataactcacttacaagagctacaaggtcatatgttataaaaga 275

                                                                       
Query: 241 ttcagtaacaaatgccaagcaaagtagttcaagcggaacccagcaataacgattgagccc 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 274 ttcagtaacaaatgccaagcaaagtagttcaagcggaacccagtaataacgattgagccc 215

                         
Query: 301 gtgaacaggaagct 314
            |||||||||||||
Sbjct: 214 atgaacaggaagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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